Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3204 ATGTCCAAGCCTGAGGCATTCCCGTTCACGGACTTCGGCTTTATGGCTACCTCGGACTCTGCTTTACCCGTATTCGCCATCGTTGTGCTCAGCATCATGGCCATGGCTTTCTTGCTCATCGGCTACTTCACTTTCGTCACCAGATGCTGCTCTTACTGGCACCACCTCAACCCTCTCACATGGCTTTCCATTCTGCGTCCCAGACACAGCGAAGAACCGTTCATAGCTCTCTCCCCCACCATGTGGAATCGTGGCCTCGATGAATCCATCATCCGAGAAATACCCACATTCCAGTTTGTCAAAGGTGAGGATCATGCTGGTAGTGTGAGCACTGTGTATGGGTGCGTGGTATGTTTGAGTGAGTTTCAACAACAGGACATGCTCAAAGTTCTGCCCAAATGCAGCCACGCTTTTCACTTGGACTGTGTTGACATTTGGCTTCAGAGCAACGCCAATTGTCCTCTTTGCAGATCAAGCATTTCGGGTACCGCTCGTCCTCCATTGGACCATATTGTGGCACCCAGCTCTTCTCCCCAAGATTCTCAGTTACTCTCCAATATGGGTAGCGATGAAGACTTTGTGGTCATTGAACTGGGGGAAGAAGATGGGGGATCTCTGTCACTGGGGCAACATGAACGAAATCAGTCGAGCGGGGGAAGCTTGGCACCGAGCAGAAGTCGCTCTGCAAGGAAGATGGAGCAGAAGCTGGGGCACTTGAAACCGAGGAAGTGGCAGCACCTGTCCATCATGGGAGACGAGTGTATTGATACGAGGAAGAAAGATGAACACTTCTGTATTCAGCCCCTTCGAAGATCTTTCTCCATGGATTCTGCAAATGATAGGCAAGTTTACTTGGAAGTTCAAGCCATTGCACAGCAGCCACATAGGCATCAAAACGAGGCAAGCGGGAGTGAAGACAGTAACAGTAACAGCAGAGGTCGAAGGTCTTTCTTTCCATTTCGTTATGGTCGTGGATCCAAAAATGCGGTGCTTCCCCTGGAGAACGAAGTCTGA 1014 0.503 MSKPEAFPFTDFGFMATSDSALPVFAIVVLSIMAMAFLLIGYFTFVTRCCSYWHHLNPLTWLSILRPRHSEEPFIALSPTMWNRGLDESIIREIPTFQFVKGEDHAGSVSTVYGCVVCLSEFQQQDMLKVLPKCSHAFHLDCVDIWLQSNANCPLCRSSISGTARPPLDHIVAPSSSPQDSQLLSNMGSDEDFVVIELGEEDGGSLSLGQHERNQSSGGSLAPSRSRSARKMEQKLGHLKPRKWQHLSIMGDECIDTRKKDEHFCIQPLRRSFSMDSANDRQVYLEVQAIAQQPHRHQNEASGSEDSNSNSRGRRSFFPFRYGRGSKNAVLPLENEV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3204 337 Pfam Ring finger domain 115 157 IPR001841 -
Prci3g3204 337 FunFam E3 ubiquitin-protein ligase ATL6 76 163 - -
Prci3g3204 337 CDD RING-H2_EL5-like 115 157 - -
Prci3g3204 337 MobiDBLite consensus disorder prediction 204 242 - -
Prci3g3204 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 162 IPR013083 -
Prci3g3204 337 SMART ring_2 115 156 IPR001841 -
Prci3g3204 337 MobiDBLite consensus disorder prediction 208 224 - -
Prci3g3204 337 MobiDBLite consensus disorder prediction 228 242 - -
Prci3g3204 337 PANTHER RING-H2 FINGER PROTEIN ATL16 17 334 IPR044600 GO:0016567|GO:0016740
Prci3g3204 337 MobiDBLite consensus disorder prediction 293 315 - -
Prci3g3204 337 MobiDBLite consensus disorder prediction 293 320 - -
Prci3g3204 337 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Prci3g3204 337 SUPERFAMILY RING/U-box 114 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3204 Prci-Chr3 43192725 43193972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3204 12 297 C3H Transcription Factor Family AT1G04360 43.408 4.23e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3204 K19041 - gmx:100809883 386.726