Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3202 ATGGATTTCTTCCTTCATCGGTTCCAAAATCAAGAGCCATCCCCTGCAAATTCCAATTCCTCTGTTTCTGAACAAGCATTCAGCTGGGAAGACTTCTTCACCTTCAACTCCAGTGACCACTCATCCTCTCAATACAGTTCTGTGGGAGCAATTGAATCGCAAGAAGTCTCCTCACAAGTGGAAGTGGCCGATACTAATAATGCATCCTCATCGCCGACATCAAAACAACATCAGGGTGGTGGCAGCAGCAGTAAGAAAGACAAGAGGCCGTACAGGGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCCACGAGAAACGGGGTGAGAGTGTGGATCGGAACGTTCGATACGGCGGAGGCGGCGGCCCTGGCGTACGACCAGGCAGCTTTTTGCATGAAGGGGTCGCTGGCGGTGCTGAATTTCCCGGAGCAGGTGGTGAGGGAATCGCTGGAAAGGATGGCGAGCAAGCCATGGGAGGAAGGTTCGTCGCCTGTGTTGGCCCTCAAGAGAAAGCACAGCCTGAGACCCAGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTTTGTCCAATCCTAAAAAGCCCAGGAACAGTAACAGCTCCTGCTGCAGGGACGGCCATGCTTCCGAGAACGTGCTTGTCTTGGAGGATTTGGGGGCTGAATATTTGGACCATCTCTTGAGCTTGACCTCTCCCGAGTTTGTTTCCTAG 729 0.5405 MDFFLHRFQNQEPSPANSNSSVSEQAFSWEDFFTFNSSDHSSSQYSSVGAIESQEVSSQVEVADTNNASSSPTSKQHQGGGSSSKKDKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFCMKGSLAVLNFPEQVVRESLERMASKPWEEGSSPVLALKRKHSLRPRSSSSSSSSSSSLSNPKKPRNSNSSCCRDGHASENVLVLEDLGAEYLDHLLSLTSPEFVS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3202 242 PANTHER DNA-BINDING DOMAIN 44 233 IPR044808 GO:0003700|GO:0009873
Prci3g3202 242 MobiDBLite consensus disorder prediction 167 211 - -
Prci3g3202 242 MobiDBLite consensus disorder prediction 56 94 - -
Prci3g3202 242 MobiDBLite consensus disorder prediction 1 22 - -
Prci3g3202 242 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Prci3g3202 242 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Prci3g3202 242 CDD AP2 91 150 IPR001471 GO:0003700|GO:0006355
Prci3g3202 242 FunFam Ethylene-responsive transcription factor 2 89 149 - -
Prci3g3202 242 MobiDBLite consensus disorder prediction 183 211 - -
Prci3g3202 242 MobiDBLite consensus disorder prediction 56 80 - -
Prci3g3202 242 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Prci3g3202 242 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Prci3g3202 242 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Prci3g3202 242 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Prci3g3202 242 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3202 Prci-Chr3 43170778 43171693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3202 87 233 AP2-EREBP Transcription Factor Family AT2G31230 59.375 1.70e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci3g3202 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3202 K14516 - gmx:100801682 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2461 1 44802639 44803907 Prci3g3202 3 43170778 43171693 CCT
Prci3g3202 3 43170778 43171693 Prci3g3202 3 43170778 43171693 ECH