Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3192 ATGGAAAATTTCAAGTCTTACAAGGGTCTTCAAGTCATTGGTCCTTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGCAAGTCGAACCTTATGGACGCCATTAGCTTTGTGCTCGGGGTAAGGACAGGCCAGCTGCGTGGTGCTCAACTCAAGGACTTAATCTACGCGTATGACGACAAGGAAAAGGAACAGAAGGGACGGAGGGCGTTCGTTCGTTTGGTTTATCAGCTGGGCAATGGGTCGGAGATTCAGTTCACCAGGACTATCACGAGCGCCGGCGCGAGCGAATACCGGATTGATGGGAGTCCCGTAACGTGGGACGTGTATAATGGTAGACTAAAGTCACTTGGTGTTCTTGTCAAGGCTCGCAATTTCCTGGTGTTTCAGGGTGATGTGGAATCCATTGCATCGAAGAGTCCAAAAGAGCTTACTGCTCTTCTTGAGCAGATATCTGGCTCTGATGAGCTTAAGAGAGACTATGAGCGATTTGAAGAAGAAAAGGCCACGGCTGAAGAAAAATCAGCCCTTGTTTATCAGAAGAAGAAGACTGTAGTTATGGAGAGAAAGCAGAAGAAAGAGCAAAAGGAAGAAGCAGAGAAGCACATTCGTTTGCAGGATCAACTGAAAACTATAAAGCAAGAGCATTTCTTGTGGCAGTTGTTCAATATAGAAAGAGATATTGAAAAGACAACTGACGATCTTGAGGATGAGAAAAAAAGTCGTGAAGGTGTCATGGAAGAACTAGAAAAATTTGAAGCTGAAGCTAGTAAAAAGAAGAAAGAACAGGCAAAATATCTGAAAGAGATTGCACAATGTGAAAAGAGAATTGGTGAGAAGAGCAATAAACTTGACAGAAATCAACCTGATCTTCTGAAGTTGAAAGAGGAAATGGCTCGTATTAACTCAAAAATGAAAAAAGGGAAGAAGGAGCTAGATAGAAAAAGGGAAGAACGGAGAAAACATGCTAATGATATAACAGAGCTACAGAAGGGTATACGAGATCTCACTGCCAAGTTGGAAGATCTGCAGGAAAAGAGTCGAGATGCCAGTGATGAATTGAAGTTAGATGGCAGTGACTTGGAGGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTCAGGGAGGAGAAAGAACTTCTGGATAGGCAACAACATGCAGATAGCGAAGCTCAAAAAAATTTGGATGAAAATCTTCAACAATTAAGGAATAGGGAGTCTGAATTGAATTCACAAGAAGAACAGATGCGAACAAGGCTGAAAAAAATTCTTGATAATTCTACTAAACATAAGGATGACCTTGCAAATTTGAAAAAAGAATTGCGTGTGATGCAGGACAGACATCGAGATTCTAGGAAGAAATATGAATATTTGAGGTCTAGAATTGGTGAAATAGAAAATCAACTTCGTGAATTAAGGGCTGATCGATATGAAAACGAGAGAGATGCAAAATTGTCTCAAGCTGTGGAGAGTCTCAAACGTCTGTTTCAGGGAGTCCATGGCCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCACAAACATTTATTCCTTTGCAATCAGTTCGTGTGAAGCCAATTATTGAAAGATTGCGCACATTAGGTGGCACAGCAAAGCTGGTTTTTGATGTCATCCAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTGAGCTGGAGTGGTGAGAGGTTCAAAGTTGTAACTGTGGAAGGAATTCTGCTGACAAAATCTGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATCGAAGGCCTGAAGAAAAAGAAGGAGAATTTTGAATCTGAGTTGGAAGAGGTAGGATCCATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCCGGAAAAATTAGTGGACTTGAAAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAGGCGAGAGAAAGAGATAATCAAGAAAATTGAACGGATCAGTCCAGAACTTCAGAAGTTAAACGGCACTATTGATAAGAGGAATGCAGAAATACGTAAGCTGGAGAAGAGGATCAATGAAATTACTGATCGGATTTACAAAGATTTCAGCAAGTCAGTTGGGGTTGCTAACATTCGTGAGTATGAAGAAAATCAACTGAAGTCTGCTCAAAATGTAGCAGAGGAGAGGCTGAGCTTGAGTAGCCAGCTATCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGATATGACTACACGGATTAGAGAACTAGAATCTTCTTTGAGTGCTCTTGAGCATGATTTAAAACAAGTACAGCACAAAGAGGCTGAAACGAAGCTGGCAGCTGAGAAAGCTACTGAAGATATTAACCAGTTTAAGGAAGAAGTTCAGGAGTGGAAATTGAAGTCGGAAGATTGTGAGAAGGATATCCAAGAGTGGAAGAAGCGTGCTTCTTCAGCCACAACAAGCATATCCAAACTTAATCGTCAGATAAACTCAAAGGAGGCACAGATTGAGCAGTTGATTGTGCAGAAGCAGGAAATTGTAGAAAAGTGTGAACTAGAACAGCTTAGCCTGCCAATTATAGCAGATCCAATGGATACTGGTACTTCAATACCAGGTCCAGTTTTTGACTTTGATCAACTAAGTAGGGCACTGAAGGATAGGAAGAACTCTGACAGGGACAAAATTGAGGTTGAATTTAGGCAAAAAATGGATTCCCTTACATCTGAAATTGAAAGAACAGCACCGAATTTGAAGGCATTAGACCAATATGAAGCTTTGCTGGAAAAGGAAAGGGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAGGAGGAGAAGGAGAAGGCTGATAGGTTCAATGCAGTGAAGCAGAAGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCTGGTAATATCGATAAAATATACAAACAACTTACAAAGAGCAACACGCATCCGCTGGGTGGAACAGCATACTTAAATTTAGAAAATGAAGATGATCCATTTCTACATGGCATCAAATACACTGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAGCAACTGTCTGGTGGGGAGAAGACTGTTGCTGCACTTGCTTTGCTATTCTCCATCCACAGTTACAAGCCCTCACCTTTTTTCATATTGGACGAAGTCGATGCTGCATTGGACAACTTAAATGTTGCCAAGGTTGCTGGATTTATTCGTTCCAAATCTTGTGAGGGAGCAAGGGCTAGCCAGGATGCTGATGGTGGCAGTGGCTTTCAAAGTATTGTGATATCCTTGAAGGATACCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACCGTGATTCAGAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTGACCAAATACCGCGAGTCCTAA 3609 0.4154 MENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSAGASEYRIDGSPVTWDVYNGRLKSLGVLVKARNFLVFQGDVESIASKSPKELTALLEQISGSDELKRDYERFEEEKATAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHIRLQDQLKTIKQEHFLWQLFNIERDIEKTTDDLEDEKKSREGVMEELEKFEAEASKKKKEQAKYLKEIAQCEKRIGEKSNKLDRNQPDLLKLKEEMARINSKMKKGKKELDRKREERRKHANDITELQKGIRDLTAKLEDLQEKSRDASDELKLDGSDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLDENLQQLRNRESELNSQEEQMRTRLKKILDNSTKHKDDLANLKKELRVMQDRHRDSRKKYEYLRSRIGEIENQLRELRADRYENERDAKLSQAVESLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLVFDVIQFDPALEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVEGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKENFESELEEVGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLRREKEIIKKXIERISPELQKLNGTIDKRNAEIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTTRIRELESSLSALEHDLKQVQHKEAETKLAAEKATEDINQFKEEVQEWKLKSEDCEKDIQEWKKRASSATTSISKLNRQINSKEAQIEQLIVQKQEIVEKCELEQLSLPIIADPMDTGTSIPGPVFDFDQLSRALKDRKNSDRDKIEVEFRQKMDSLTSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNAVKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGGSGFQSIVISLKDTFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3192 1203 SUPERFAMILY Smc hinge domain 464 668 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Prci3g3192 1203 Gene3D - 482 563 - -
Prci3g3192 1203 Pfam RecF/RecN/SMC N terminal domain 2 1185 IPR003395 -
Prci3g3192 1203 Coils Coil 223 278 - -
Prci3g3192 1203 Gene3D - 1 217 IPR027417 -
Prci3g3192 1203 Gene3D - 827 1202 IPR027417 -
Prci3g3192 1203 Coils Coil 184 217 - -
Prci3g3192 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 258 IPR027417 -
Prci3g3192 1203 Coils Coil 695 728 - -
Prci3g3192 1203 SMART SMC_hinge_2 503 619 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Prci3g3192 1203 Coils Coil 993 1013 - -
Prci3g3192 1203 MobiDBLite consensus disorder prediction 385 418 - -
Prci3g3192 1203 PIRSF SMC 1 1199 IPR024704 GO:0005524|GO:0016887
Prci3g3192 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 1194 IPR027417 -
Prci3g3192 1203 Coils Coil 661 681 - -
Prci3g3192 1203 Coils Coil 156 176 - -
Prci3g3192 1203 FunFam Structural maintenance of chromosomes 1A 1 210 - -
Prci3g3192 1203 CDD ABC_SMC1_euk 1 143 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Prci3g3192 1203 Gene3D - 564 646 - -
Prci3g3192 1203 Pfam SMC proteins Flexible Hinge Domain 503 617 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Prci3g3192 1203 Coils Coil 815 919 - -
Prci3g3192 1203 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 1 1203 - -
Prci3g3192 1203 Coils Coil 737 764 - -
Prci3g3192 1203 CDD ABC_SMC1_euk 1082 1197 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Prci3g3192 1203 Coils Coil 398 488 - -
Prci3g3192 1203 SUPERFAMILY Tropomyosin 659 909 - -
Prci3g3192 1203 Coils Coil 293 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3192 Prci-Chr3 43107520 43120456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3192 1 98 Structural Maintenance of Chromosomes family AT5G61460 34.286 8.36e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3192 K06636 - gmx:100785315 1915.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3192 3 43107520 43120456 Prci3g3192 3 43107520 43120456 ECH