Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3179 ATGGCAGCACGCTCTACTTCCTCCATTGAAAGATCAGGCACTAAGCAGCTCAATAACATAGGCATTTCTGGAGCTTTGCCGTCATCCTTGTCAGTCCTTTCAACCCCGATAGGAGAGGCATTTGCCAAATTTTCCGATTCTCAGCCGGCTGTCATGGCAAAAGAGTTTATGACTGGGCCTATAGGTCAGCCGAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACATTTTTTCATCTTCACCTGGATATTCAACTGATCTTCATCACTCATCTCTTTCGCCTCAGGAAAAACACTCAACAAGTGCTCATTTCATTTCACAGTCATCCAGTAACATCTCTTCATTGCCATTTTCTTATTCTTCAAATAGTGGACCGCTTCTTTCTTCTACGCCAAATAATTATTTCAAAGAAAACAGTGCTTCCTGGAATGTAGAAACCTTGCCCAACTTTCTTGATTTCCCTGTACATACTACCACCGAGAATAGTCAAGCAGAAAATAGTGCCTGCACTGTGATGGCATCCGAGGAGTACTGTAAGCAGAATGAATGGCAAGAGTGGGCTGACCAGCTTATGGATGACCCTTTGACTTCGAATTGGAATGAGCTTCTTACTGACAACATTCAAGACCTGGAGCCAAAGGTGGCGTGCCATGTTTCAAAACCATCTTCACATATTCCAGGAAACCAGTCCATAGGTCAGCAGCAACTTCCTGCTTCATCTGGAGACAATTGTGTTGGTGCCCTCCCAACTTCCTCAGCAAGTTCTGCTCCTGCCAAGCCACGGATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACCCCTAAGGGCGTGCTGAAGCTCATGAATGTTGAAGGGCTGACAATATATCATGTTAAAAGTCACTTGCAGAAATACAGGACTGCTAGATATAGACCGGAACCATCTGAAGGATCCTCGGAGAAACGACTGACTTCCATTGAAGATATGCCTCCTCTAGACTTGAAAACTGGTATTGAGATCACTGAAGCGCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAACTTGAGATTCAACGAAACCTACAACTTCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAATGCAAATCTGGCGCTGACAAGAAGTCATCATCAGCAGCTCCCGCGGAGAATCCATCTGGAGAGTCTTCAGATGCTGTCAAAGATTGTCCTGCCGAAGGTGAAGTGGAGGACCATTGCAAGTCAGGCCGTGATCAGGCTAATGGCACTGCTGCAGTTGGGGAAAGCTCTCTGGAAGTGGGTATGAAGGATGATGGACCTGAAAAACAAGCTTCTGATAACCCTAAGCTACAAAGCAGTGAAGAGAGTGCTCCAGCCTCCAAGAGGCAGAGGACGGACGAGTAA 1446 0.4647 MAARSTSSIERSGTKQLNNIGISGALPSSLSVLSTPIGEAFAKFSDSQPAVMAKEFMTGPIGQPSHLNSSGAVGHIFSSSPGYSTDLHHSSLSPQEKHSTSAHFISQSSSNISSLPFSYSSNSGPLLSSTPNNYFKENSASWNVETLPNFLDFPVHTTTENSQAENSACTVMASEEYCKQNEWQEWADQLMDDPLTSNWNELLTDNIQDLEPKVACHVSKPSSHIPGNQSIGQQQLPASSGDNCVGALPTSSASSAPAKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKRLTSIEDMPPLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGADKKSSSAAPAENPSGESSDAVKDCPAEGEVEDHCKSGRDQANGTAAVGESSLEVGMKDDGPEKQASDNPKLQSSEESAPASKRQRTDE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3179 481 MobiDBLite consensus disorder prediction 391 481 - -
Prci3g3179 481 MobiDBLite consensus disorder prediction 415 431 - -
Prci3g3179 481 Coils Coil 347 367 - -
Prci3g3179 481 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Prci3g3179 481 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Prci3g3179 481 MobiDBLite consensus disorder prediction 313 335 - -
Prci3g3179 481 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 236 475 IPR044848 GO:0003700
Prci3g3179 481 MobiDBLite consensus disorder prediction 218 245 - -
Prci3g3179 481 Gene3D - 258 317 - -
Prci3g3179 481 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Prci3g3179 481 FunFam Myb family transcription factor 258 316 - -
Prci3g3179 481 MobiDBLite consensus disorder prediction 85 105 - -
Prci3g3179 481 MobiDBLite consensus disorder prediction 313 334 - -
Prci3g3179 481 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Prci3g3179 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 316 IPR017930 -
Prci3g3179 481 MobiDBLite consensus disorder prediction 222 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3179 Prci-Chr3 42950284 42956432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3179 9 420 G2-like Transcription Factor Family AT4G28610 47.319 1.39e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci3g3179 Myb_DNA-binding 1.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3179 - - gmx:100810560 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2559 1 45341651 45347857 Prci3g3179 3 42950284 42956432 CCT
Prci3g3179 3 42950284 42956432 Prci3g3179 3 42950284 42956432 ECH
Prci1g2559 1 45341651 45347857 Prci3g3179 3 42950284 42956432 ECH