Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3175 ATGCAGGGTGGTTCGTCTCCGGGGTCCATGCTCACGGAGTCTAGAGAGGATCACTTGGTCCTTTCTTCTGAGGATTCTTCCTGCCCGGATGAGTCCGAGCTTGAATTGGGTCTTGGGTTGAGCCTTTCTCATCCTCGAGTCAAGTCTCAGCCACTCCCAACGACTCAATATGCCCGAATTTTGACGGCTATGGATTTTTCTTCGTCGCCCTCCTCCTCCTCCGCCTCCTCTTCCTCTCCTAACGTGACAGCTGGCACTAAGAGAGCTGCTGATTCTCTTGCCGCTGCAAACAGTCCTAGTCAGGTTGTTGGATGGCCTCCTCTCCGAGCATATAGAATGAACAGCTTTAATAATAATCGCTCAAAATCTCCAGCCACTGAAGCTAACAATAATCAAACAGCTGCTAGGAAGAGTGCTGACAATGGAAGTACTAAGAACAACAGCAATGCCAAAGAAAAAGCTCACGTCAGGAGATCCCTATTTGTCAAGGTAAATATGGATGGGACACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAACCTTGGCGCAAACTTTGGAGGATATGTTTAATGAACCAACTCCAGTTGTCCCGAAAGATGGGGAGAATCACGTATTGCCATTGGAGCAAAAAAGAGACACATAA 657 0.4734 MQGGSSPGSMLTESREDHLVLSSEDSSCPDESELELGLGLSLSHPRVKSQPLPTTQYARILTAMDFSSSPSSSSASSSSPNVTAGTKRAADSLAAANSPSQVVGWPPLRAYRMNSFNNNRSKSPATEANNNQTAARKSADNGSTKNNSNAKEKAHVRRSLFVKVNMDGTPIGRKVDLSAHSSYETLAQTLEDMFNEPTPVVPKDGENHVLPLEQKRDT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3175 218 Gene3D - 154 215 - -
Prci3g3175 218 MobiDBLite consensus disorder prediction 66 158 - -
Prci3g3175 218 ProSiteProfiles PB1 domain profile. 159 218 IPR000270 GO:0005515
Prci3g3175 218 MobiDBLite consensus disorder prediction 195 218 - -
Prci3g3175 218 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 198 IPR003311 GO:0005634|GO:0006355
Prci3g3175 218 MobiDBLite consensus disorder prediction 112 149 - -
Prci3g3175 218 MobiDBLite consensus disorder prediction 66 86 - -
Prci3g3175 218 MobiDBLite consensus disorder prediction 1 35 - -
Prci3g3175 218 Pfam AUX/IAA family 67 198 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3175 Prci-Chr3 42915909 42918792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3175 112 204 B3 DNA Binding Superfamily AT2G46530 31.000 9.96e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci3g3175 AUX_IAA 2.1e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3175 K14484 - gmx:100779400 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2572 1 45447993 45452283 Prci3g3175 3 42915909 42918792 CCT
Prci3g3175 3 42915909 42918792 Prci3g3175 3 42915909 42918792 ECH