Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3162 ATGGCGCTGTGGATGGAAAAGGGTTCCGAGCCCTTGACCGAAAGCGAGAAAGCAGACCTTGATGCTATTGCTGCCCTGAAAGAGTCCGCTGCTATTGAACTCAAGGAAAAGGGCAATCAATATGTCAAAATGGGTAAAAAACATTATTCTAATGCTATTGATTGTTACACAAGGGCAATAAATCAGCAAGTCTTGAGCGACTCCGAGAACTCAGTCATTTTTGCAAATAGATCACATGTAAATTTGCTGCTAGGAAATTATAGACGAGCTCTAACAGATGCAGAGGAGGCAATTAAGTTGTGCCCATCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTTTTTCATTAAATTTGTTGGCTGAAGCACAATGCCATTGTCAAAACGGCCTTCAGTTGGATCCAAACAATGAAGACTTGAAGAAGCTTGGCCAGCAGATTGATTTAAAGAAAGCAGAGCAGGAAAAGCATGAAGCTGAATTATCCAAAGCTGTTGCAGAGACAAAGGAACTAGTGTTGGCTATCGAGAATAGGGGCCTGAAGATTGGAAAGGCAGTGTTTCAAGAACTTACTGGACTTAAAAAACCAGTATTAGACAAAAACAATATTCTTCATTGGCCTGTTCTTCTCCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAAGATTTCTGTGAGACTGACATGTTTGCAGTTCATCTTGATATGATGTTTGCAGAAGACCAGCCTTTGCCATGGGATGATAATAACAATTACAAACGTGAATTTATAGAATTATACTATGAGGCTGGTTCTGGAGTCTGTCTCCCAAAGGCGAAGCTACTTCATTTTTTACTGGAGGGAACTGCAGCTTCTCGACATGAAAGTGTCAGTGATGAAGAGAAAGATGCAGTTCATGGCTCTAACCACGTTGACACGGGCACTCCTAAATGGGTCAAAGTAAATGAAAGGACGACGCTTCATGATGTTCTGAAGGACCCCAATTTTATCATTCCTGGCATCCCAGTATTCTTTGTTGTTTCAAAGCGATCCAGCTTTTACGGCAAGTTCAAAGCTGGAAAATGGACTCCTCCAAGCATATGA 1086 0.4125 MALWMEKGSEPLTESEKADLDAIAALKESAAIELKEKGNQYVKMGKKHYSNAIDCYTRAINQQVLSDSENSVIFANRSHVNLLLGNYRRALTDAEEAIKLCPSNIKAIYRAAKASFSLNLLAEAQCHCQNGLQLDPNNEDLKKLGQQIDLKKAEQEKHEAELSKAVAETKELVLAIENRGLKIGKAVFQELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFAVHLDMMFAEDQPLPWDDNNNYKREFIELYYEAGSGVCLPKAKLLHFLLEGTAASRHESVSDEEKDAVHGSNHVDTGTPKWVKVNERTTLHDVLKDPNFIIPGIPVFFVVSKRSSFYGKFKAGKWTPPSI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3162 361 Gene3D Tetratricopeptide repeat domain 29 151 IPR011990 GO:0005515
Prci3g3162 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Prci3g3162 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Prci3g3162 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Prci3g3162 361 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Prci3g3162 361 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Prci3g3162 361 Coils Coil 141 170 - -
Prci3g3162 361 CDD CTWD_Cns1-like 170 353 - -
Prci3g3162 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 358 - -
Prci3g3162 361 Pfam Cns1/TTC4 Wheel domain 200 267 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3162 Prci-Chr3 42805861 42809700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3162 14 162 Calmodulin-binding Proteins AT3G25230 30.625 6.11e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3162 K24927 - gmx:100783179 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3162 3 42805861 42809700 Prci3g3162 3 42805861 42809700 ECH