Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci3g3124 | ATGGGAGACGGAGCAGTTTGCGTCGAATCATTAGCAGATAGAACAGGTGAAGACGATGAGTTATCAAGAACGGACCTGAAGAGGGACTGCCAATGTTTTACTGATACTGAACTTGACCCCTCCCCTAATAAGAAACAAGCGAAGGAAGTCTCAAACGACGACGTGCGCTCTGAGGTTTCCAATCCCAATATTTCTTCAAAAGAGAATGTTTTAGCTTTTCAAGATATTAGTAGCCAGCCGAGCGAGTTGGCAAATACTAATCAAGCAGAGTGTGGGGAAGTAACGTCTACTTGTTTGGAGAATTCAAGCTCGGACGAGACCTTGAGTGATGGCGGGGGTGATCATAATACTATTTCCCAGAATGATAAGGGCGCGAGCAGTGCTGAAATGACGTCCTGTGTTGTACTGGAAATTCCCAAGCATGCCAGTGCATCTGGAATTAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGACTATCAGTCACTTGCTAGTACTGATAGGAATCCTTACGACGATGAGGCTTTGTTAAGTTCTGATTATAAGTCGGGGATGTTAGATAGCTCTTACGGGATGGAATATGTTCAAGCTGGTGATTTCAACTCGTACGCTCGAAATATGGAGTTGAAAATGTCAAAGAAGGTAGTTCCTAGCTGTTATCCTACAAATGTTAAGAAGCTGCTAGCAACTGGTATTCTTGATGGAGCTCGAGTGAAGTACATTTATACTCATGGCGCAGGAAAGATCGAGCTGCCTGGGATTATTCAGGGTGGTGGATATATGTGTGGCTGCTCGCTGTGCAGTTTCTCCAAAGTTCTAAGTGCGTATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGACATCCCAATAATCACATATTCCTGGAAAATGGAAAACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTGAGCCTATTAGATGAGGTTATAAAGAACGTTGCTGGTTCATCTGTCAATGAAGAGTCCTTCCAGGTTTGGAAAGCAAGTCTTTTGCAAAGCAATGGGCAGGTTGGGGCGGACAATTTTTGTAACTCCAAGCTTGTTGGCCTGCCTCATACAAACATAAGTGAATTTGTAGATGGTGTGAGCTACATGTCTTGTTCAGATGTGCTGAGTCCTGTTGAGCAACAAAGTCATGAAAAGCAGACAACTGACGAGAGGAAACATGTGAAAAAATCAAGCTCCCATACTTCTAACTTGGGTCTACAGCAAAAGAAAAATGTAGATGGTTGCAATAAGAGAAGGGATAATGATTTGCATAGGCTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAGGGAAATGGTATAGTTTGTGGTTGTTGTGATAGAGAGATAAGCCCTTCCCAGTTTGAAGCTCATGCTGGAATGGCTGCCCGACGTCAACCTTATCGCCATATATATACTTCCAACGGATTAACACTTCACGATATAGCCCTCTCATTAGCAAATGGTCAAAACCTTACCACTGGAGATAGTGATGACATGTGCGCTATATGCGGAGATGGTGGAGATTTGATTCCTTGCAATGGATGCCCTAGGGCTTTTCATGCAGTTTGCTTAGGTTTACAATGTGCTCCAGAAAGCTGTTGGCTTTGTCAAACTTGTAGAGATATTGCTGGTTGCAGCAGAATATCTTCTACAGCAAGGCCAATTAAGATAAGGTTGACCCGGGTTGTTAAAGCACCTGAATTTGAAATGGGTGGTTGTGTTGTTTGTAGGGAGCATGATTTTAGTGTCGCTAAATTTGATGAGCGAACAGTTATAATTTGTGATCAGGAATTGCCCAAGGACAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCCCTGCAAAATTCAGTTTCTGCTGGAGCAGAGGTTATACCACCTTGCTTGTCAGTCCTAATAAATAGGAAGCGTGAGGAGAGGGGCTTGCCTATTGATGGAGGAGGCATTGATGATATCCAGTGGCGAATTCTAAGCGGAAAAAGTCGTTATCCTGAACACTTACCATTACTTTCACGGGCAGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAGTCTCTGGTCGTGACTTGATTCCTGTTATGGTCTACGGGAGAAATATTTCAGGCCAAGAGTTTGGGGGGATGTATTGTGTTGTTTTAATAGTGAAATCTGTTGTTGTATCTGCTGGGCTACTTAGGATTTTTGGACGTCATGTTGCTGAGCTTCCAATGGTTGCTACAAGTAGAGAACATCAAGGAAAAGGCTATTTTCAAGTGTTATTCTCTTGCATAGAGAAGCTGCTGTTGTCCCTGAAGGTGGAAAAGCTGGTGCTTCCTGCAGCTGAGGATGCTGAATCAATTTGGACTAGAAAACTAGGCTTCCGAAAGCTGACTGAAGATCAGTTATCCAAATATCTGAGAGAGGTACAGCTCACCCTCTTCAATAAGACTTCGATGCTGGAGAAGACAGTGCAGGTGGCGATGGAATGA | 2562 | 0.4286 | MGDGAVCVESLADRTGEDDELSRTDLKRDCQCFTDTELDPSPNKKQAKEVSNDDVRSEVSNPNISSKENVLAFQDISSQPSELANTNQAECGEVTSTCLENSSSDETLSDGGGDHNTISQNDKGASSAEMTSCVVLEIPKHASASGIRKITFKFSKKKEDYDYQSLASTDRNPYDDEALLSSDYKSGMLDSSYGMEYVQAGDFNSYARNMELKMSKKVVPSCYPTNVKKLLATGILDGARVKYIYTHGAGKIELPGIIQGGGYMCGCSLCSFSKVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQVWKASLLQSNGQVGADNFCNSKLVGLPHTNISEFVDGVSYMSCSDVLSPVEQQSHEKQTTDERKHVKKSSSHTSNLGLQQKKNVDGCNKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLIPCNGCPRAFHAVCLGLQCAPESCWLCQTCRDIAGCSRISSTARPIKIRLTRVVKAPEFEMGGCVVCREHDFSVAKFDERTVIICDQELPKDKWFCCDDCNRIYVALQNSVSAGAEVIPPCLSVLINRKREERGLPIDGGGIDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGRHVAELPMVATSREHQGKGYFQVLFSCIEKLLLSLKVEKLVLPAAEDAESIWTRKLGFRKLTEDQLSKYLREVQLTLFNKTSMLEKTVQVAME | 853 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci3g3124 | 853 | Gene3D | - | 729 | 836 | - | - | |
| Prci3g3124 | 853 | SMART | PHD_3 | 526 | 567 | IPR001965 | - | |
| Prci3g3124 | 853 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 514 | 611 | IPR013083 | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 33 | 69 | - | - | |
| Prci3g3124 | 853 | ProSitePatterns | Zinc finger PHD-type signature. | 527 | 566 | IPR019786 | - | |
| Prci3g3124 | 853 | ProSiteProfiles | Zinc finger PHD-type profile. | 524 | 569 | IPR019787 | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 392 | 406 | - | - | |
| Prci3g3124 | 853 | PANTHER | AUTOIMMUNE REGULATOR | 14 | 847 | - | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 388 | 424 | - | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Prci3g3124 | 853 | MobiDBLite | consensus disorder prediction | 100 | 124 | - | - | |
| Prci3g3124 | 853 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 690 | 840 | IPR000182 | GO:0016747 | |
| Prci3g3124 | 853 | FunFam | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein | 514 | 592 | - | - | |
| Prci3g3124 | 853 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 732 | 823 | IPR016181 | - | |
| Prci3g3124 | 853 | Pfam | Tify domain binding domain | 460 | 509 | IPR032308 | - | |
| Prci3g3124 | 853 | Pfam | Tify domain binding domain | 256 | 310 | IPR032308 | - | |
| Prci3g3124 | 853 | SUPERFAMILY | FYVE/PHD zinc finger | 512 | 567 | IPR011011 | - | |
| Prci3g3124 | 853 | FunFam | PHD zinc finger protein | 729 | 836 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci3g3124 | Prci-Chr3 | 42467191 | 42476274 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci3g3124 | 1 | 848 | PHD Transcription Factor Family | AT3G53680 | 52.370 | 0.0 | 859 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci3g3124 | - | - | gmx:100808999 | 1263.83 |