Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3113 ATGGAACACGTAGCAGTAGTTAAGGAACAGAGAGCAGATCAAAGCAGCTTCGAGGACATGGCAAAGTGTCTGATGATGCTATCCCATGTCCAAGACAATAATAACATTATGAAAAAGCCTCGAAGCGGCGAAGTAAGCTGTGTGGAATACGAATGCAAGACATGCAAGCGCAAGTTCTCGTCGTTTCAGGCGCTGGGTGGGCACAGGGCAAGCCACAAGAGGCCGAGGCTGGAGGGAGATCAGGACCTGAGAGCGCAGGCCAAGTCTCTGCGCTTAGCGACGTCGAGACCCAAAATACACGAGTGCTCGATTTGTGGTCTGGAGTTTTCGTTGGGCCAAGCACTGGGTGGCCACATGAGGAGACACAGATTCGCAGCCCTAAAAGACGTTGTCGTCAGCGACAATGATCCTGGCTTTTCTTCCAAAGTGCCGGTTTTGAAGAGATCCAATAGCAAGAGGGTTCAGTTCTTGGACCTTAACTTGACCCCTCTCGAGAATGATTTGAAGCTCTTGTTTGGAACTGTGGCGCCTAAGGTTGAGGCCCTCATCTGA 552 0.5091 MEHVAVVKEQRADQSSFEDMAKCLMMLSHVQDNNNIMKKPRSGEVSCVEYECKTCKRKFSSFQALGGHRASHKRPRLEGDQDLRAQAKSLRLATSRPKIHECSICGLEFSLGQALGGHMRRHRFAALKDVVVSDNDPGFSSKVPVLKRSNSKRVQFLDLNLTPLENDLKLLFGTVAPKVEALI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3113 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Prci3g3113 183 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Prci3g3113 183 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Prci3g3113 183 PANTHER ZINC FINGER PROTEIN ZAT5 12 166 - -
Prci3g3113 183 Pfam C2H2-type zinc finger 100 123 - -
Prci3g3113 183 Pfam C2H2-type zinc finger 50 75 - -
Prci3g3113 183 SUPERFAMILY beta-beta-alpha zinc fingers 50 122 IPR036236 -
Prci3g3113 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Prci3g3113 183 Gene3D Classic Zinc Finger 47 122 - -
Prci3g3113 183 SMART c2h2final6 100 122 IPR013087 -
Prci3g3113 183 SMART c2h2final6 50 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3113 Prci-Chr3 42373606 42374332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3113 7 180 C2H2 Transcription Factor Family AT2G37430 45.355 1.32e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g3113 zf-C2H2_6 9.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3113 - - gmx:100527151 199.134