Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3106 CTCCGATCAACTACCCCACACCACCGTCCTATATATACGCTGCTCCGCCTCACCTTCCGATCCCAATCTCAGCTCCTCCTCTCACGGCCACTTCATCGCCGGAATGCTCTCTTACCTTATTCCCATGTCGACTCCACTTTGCGTGCTCTCGCCGCCCGAGCTGAAGGCTTTGGTGGCTGTGCCATTGGTGGGCTTCATGGTCCCCTTTATCACGTCACGACCTTAGCAGATGATGGGCCAGGATCACTTCGTGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTATTTGAGGTTTCCGGAACTATTCATCTTTCATCTTACCTGAATGTGTCATCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGTTAGAAGGTGGTAGAGGACCTGATGTAGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGATCGTTGTAGCCTCCGTGATTTTGATGATGGCTTGATAGATATTACACGAGAAAGCACAGATATTACTATTTCTAGGTGTCATTTTTCTCAGCATGACAAAACGATGCTTATTGGCGCAGATCCCTCACATACTGGTGATAGATGCATAAGGGTGACCATTCACCATTGTTTCTTTGATGGGACACGACAGCGGCATCCTCGTGTAAGATTTGCAAAAGTACACCTGTACAACAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCAAGCGTGGAGTCACAGATATTCTCACAGTGCAACATCTATGAAGCAGGGCAGAAGAAAGTAGCATTTAAGTATCTTTCTGAAAAGGCAGGAGACAAGGAAGCAGCAGCGAGTGGTCACATATGGTCTGAAGGAGACTTGTTCATAAGTGGAACTCAGGCAGGCTTGATGACTGAGACGAAGAGCGTGGGAGCTACCGCATTTCATCCCAGTCAGCACTATACAACATGGACAGTGTCACCTCCTACAGAGGATCTCAAACAGCTTCTTCATCACTGCACTGGATGGCAGTGTGTAGCGCGGCCACCAGATCAGCCCGCCCCTGGCTGCTGA 1107 0.4734 LRSTTPHHRPIYTLLRLTFRSQSQLLLSRPLHRRNALLPYSHVDSTLRALAARAEGFGGCAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEAGQKKVAFKYLSEKAGDKEAAASGHIWSEGDLFISGTQAGLMTETKSVGATAFHPSQHYTTWTVSPPTEDLKQLLHHCTGWQCVARPPDQPAPGC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3106 368 SMART amb_all 80 278 IPR002022 -
Prci3g3106 368 Pfam Pectate lyase 108 271 IPR002022 -
Prci3g3106 368 SUPERFAMILY Pectin lyase-like 53 357 IPR011050 -
Prci3g3106 368 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Prci3g3106 368 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Prci3g3106 368 PRINTS Pollen allergen Amb family signature 53 70 IPR018082 -
Prci3g3106 368 Gene3D - 39 346 IPR012334 -
Prci3g3106 368 PANTHER PECTATE LYASE 18-RELATED 42 317 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3106 Prci-Chr3 42311448 42314429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3106 75 366 Polysaccharide Lyase AT3G55140 76.027 8.35e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3106 K01728 - vvi:100255011 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3106 3 42311448 42314429 Prci3g3106 3 42311448 42314429 ECH