Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3069 ATGAACTCCACCACTTCGAATTCTCAATCAATGGCGACCTCGACGCCCACTGACGGGTCTGGCAAGAAGGTGAGAAAGCCTTATACTATAACCAAGTCGAGGGAAAGCTGGACCGAGGAAGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTAAAAGTTCAGAAGAACGGGACAATTGCACACGTGCCTCCTCCTCGACCTAAGCGCAAAGCTGCTCATCCGTACCCACAAAAGGCACCAAAGAATGTTTTGGTTCCATTGCCGGCATCCATGGCTTTCGTTTCTTCAACAAATACTATTGCACCTGGGTATACCACATGGGACGAAACTTCAGTGCCGATTAATGCTGGATCAAACAGATACATACCCTGTCAGGAAGAAATCACCACCCTTCATGGGAATGAAGCTGATATTGGATCAAAGGGGATATCAAGGATTAGCAACAGCAGTCTCAGCGGTGTTGAAACCTCTACTAGAATGCTACAAGGTTCTGAGATGCCAAAGCAAGGGAAACAAGGTCCAGTGCTTCATGGCTTACCAGACTTTGCTGAGGTTTATAGCTTTATTGGAAGTGTATTTGATCCAGATACAAAAGGACATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAGCCTTTTGTTATGCAGCGACTGAGTCAAACCAGTTTTATTTTTGGGATGCCGGGAAGAGTCATATATGGAAAAAGAAAACATTTTTATTGTTGTCCATGA 882 0.4297 MNSTTSNSQSMATSTPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAFVSSTNTIAPGYTTWDETSVPINAGSNRYIPCQEEITTLHGNEADIGSKGISRISNSSLSGVETSTRMLQGSEMPKQGKQGPVLHGLPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPFVMQRLSQTSFIFGMPGRVIYGKRKHFYCCP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3069 293 SMART sant 33 81 IPR001005 -
Prci3g3069 293 MobiDBLite consensus disorder prediction 1 37 - -
Prci3g3069 293 MobiDBLite consensus disorder prediction 1 20 - -
Prci3g3069 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Prci3g3069 293 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Prci3g3069 293 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Prci3g3069 293 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Prci3g3069 293 CDD SANT 36 79 IPR001005 -
Prci3g3069 293 Gene3D - 37 84 - -
Prci3g3069 293 PANTHER SWI/SNF COMPLEX-RELATED 7 256 - -
Prci3g3069 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Prci3g3069 293 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Prci3g3069 293 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3069 Prci-Chr3 42019181 42023963 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci3g3069 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3069 - - pcin:129305289 588.956