Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3065 ATGGCTGCAGCAGTTCGTCCACTCGTCAGCGTACAAGTTCTTGAGGGCGATATGGCTACCGATGAAGCCCAGACAGTTCCACTTCCTGATGTTATGAAGGCATCGATTCGACCCGATATCGTTACATTCGTCCACTCCAACATTTCCAAGAACAGTCGGCAACCCTATGCTGTTAGCAAGCACGCCGGACACCAGACATCCGCCGAATCATGGGGTACCGGTCGTGCAGTGTCCCGTATCCCCCGTGTCCCGGGTGGTGGTACCCACCGCGCCGGTCAGGGGGCTTTTGGTAACATGTGTCGCGGTGGACGCATGTTCGCTCCTACGAAGATTTGGCGTCGCTGGCACCGTAAGATCAATGTCAATCAGAAGAGATACGCTGTCGTTTCAGCTATTGCTGCTTCCGCAATTCCATCCCTCGTTTTGGCCCGTGGGCACAGAATTGAGTCTGTGCCCGAAATGCCTCTGGTGGTCAGTGATTCTGCTGAAGGTGTTGAGAAAACTAAGGAAGCCATCAAAGTGCTGAAGAAGATTGGTGCTTTTCCCGACGCCGACAAGGCAAAGGACAGCCATGCAATCCGTCCTGGTAAGGGTAAAATGAGAAATCGCCGATACATTTCTCGCAAGGGTCCTCTGATTGTGTATGGAACTGAGGGAGCAAAGGCTGTGAAAGCTTTCAGAAATATTCCTGGAGTTGAGATCGCGAATGTGGAGAGATTGAACCTTCTTAAATTGGCTCCTGGTGGTCATCTTGGGAGGTTTGTTATTTGGACCAAGTCTGCTTTTGAGAAGCTGGATTCGATTTATGGATCGTTCGACAAGCCATCTGAGAAGAAGAAAAGGTACTTTCTTCCTAGAGCTAAGATGGTTAATTCTGATTTGGCGAGGATCATCAACTCCGATGAGATTCAGTCCGTCGTGAGGCCCATCAAGAAAGAAATTAAGCGGGCCCCACTCAAGAAGAACCCGCTTAAGAATCTCAATGCTATGTTGAAACTGAATCCATATGCTAAAACTGCCAAGAGGATGTCACTTCTGGCTGAAGCGCAGCGTGTGCAAGCAAAGAAAGAGAAGCTTGATAAGAAGAGGAAGTCTGTCTCTAAGGAGGCGGCTTCTGCTATAAAGGCTGCTGGAAAAGCATGGTATCAAACGATGGTGTCTGATTCTGGTTACACGGAATTTGAGAACTTCTCTAAGTGGTTGGGTGTTTCCCAGTGA 1218 0.4918 MAAAVRPLVSVQVLEGDMATDEAQTVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKHAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPEMPLVVSDSAEGVEKTKEAIKVLKKIGAFPDADKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKRYFLPRAKMVNSDLARIINSDEIQSVVRPIKKEIKRAPLKKNPLKNLNAMLKLNPYAKTAKRMSLLAEAQRVQAKKEKLDKKRKSVSKEAASAIKAAGKAWYQTMVSDSGYTEFENFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3065 405 Coils Coil 342 369 - -
Prci3g3065 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Prci3g3065 405 PANTHER 60S RIBOSOMAL PROTEIN L4 5 398 IPR045240 -
Prci3g3065 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Prci3g3065 405 FunFam 60S ribosomal protein L4 3 308 - -
Prci3g3065 405 SUPERFAMILY Ribosomal protein L4 19 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Prci3g3065 405 MobiDBLite consensus disorder prediction 54 73 - -
Prci3g3065 405 MobiDBLite consensus disorder prediction 54 74 - -
Prci3g3065 405 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Prci3g3065 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 351 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3065 Prci-Chr3 42014937 42017564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3065 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.673 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3065 K02930 - gmx:100779764 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3065 3 42014937 42017564 Prci3g3065 3 42014937 42017564 ECH