Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3063 ATGGCTGAAGCTCCGGGCAGTCCAGGCGGCGGCAGCCATGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGTGAGCAGGACAGGTTTCTTCCCATCGCCAACATCAGCCGAATTATGAAAAAAGCACTTCCTGCTAATGGAAAAATAGCCAAGGACGCAAAGGAGACTGTGCAGGAATGTGTTTCAGAGTTTATCAGCTTCATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACAATTAATGGCGATGATTTACTTTGGGCGATGGCAACTCTAGGTTTTGAGGATTATATTGATCCCTTGAAGATTTACCTGGCCAGATACAGGGAGATGGAGGGTGATACCAAGAGTTCTGCAAAAGGTGGAGATGCATCGGCCAAGAAAGATGTTCAACCTAATCCTAATGCTCAGCTTGCCCATCAAGGTTCATTTCCCCAAGGTGTTAATTACGCAAATTCCCAGGCTCAACATATGATGGTTCCTACGCAGGGTCCAGAGTAG 516 0.4826 MAEAPGSPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREMEGDTKSSAKGGDASAKKDVQPNPNAQLAHQGSFPQGVNYANSQAQHMMVPTQGPE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3063 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci3g3063 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Prci3g3063 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Prci3g3063 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Prci3g3063 171 MobiDBLite consensus disorder prediction 1 27 - -
Prci3g3063 171 Gene3D Histone, subunit A 16 158 IPR009072 GO:0046982
Prci3g3063 171 MobiDBLite consensus disorder prediction 135 165 - -
Prci3g3063 171 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Prci3g3063 171 MobiDBLite consensus disorder prediction 119 171 - -
Prci3g3063 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci3g3063 171 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Prci3g3063 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3063 Prci-Chr3 42007631 42010369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3063 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.536 2.19e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci3g3063 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3063 K08065 - gmx:100798667 304.293