Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3060 ATGTACGGAACTCCGTTAGAGAGGCACATAGCTGGATATGGCTCGTTGGATCCAAGTGGGTTCGTGGATGTAGTGGGCATTTATTTTCCTCAGCAGCTTTTCACAGTCGAGCAAAGCTGGCTCGACCTTACGTCTGCTCTCGTCTCTTTCTTCTCTTCTCCATCGGGCCAAAACCTAACTTCCCAGGTAAAAAATCATCACGGCAGCTTTGCATTGTCACTTGACTTCCAGCAGTTTCAAAAAATATGTCATATTGAGGAATTTTATAAGATGTTAGAGGAGAAGCCTAAAATCGCTCTCTTGTGCATGAGCGCTGCAGTTCATAAGGTTCTTATTACCAAATGGGAGAGTGACCAACTTGAGGATGGTGCAAAAGTAGACATCCGACTGCATAACTGTCCAGAAACTATGATTGCTCTGAAAAACTTGAAAGCAGCATATATTGACAAACTTGTTTCAGTGCGTGGTACTGTGGTGAAGGCCACCACTGTCAGGCCTCTCGTGACAGAAATGAGTTTTGAATGCGGAAAGTGCAAACAAAGAATTAGGCGTATATTTCCTGATGGAAAATTTTCACCACCCTCAATCTGCAATCTGAATGGCTGCAAGAGCAAAATGTTTAACCCATTACGATCTACAGCTCAAGCTATAGATTTTCAGAAAATAAGGTTGCAAGAACTCCTAAAACCCGAAGACCATGAAGAAGGAAGAGTTCCTCGAACAGTGGAATGCGAGCTTATCCAAGATCTCGTTGATATGTGCATACCTGGAGATGTGTTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGAAAATCGAAGAACAGAAGCCAGGGATTTTACTATTTGTATCTCGAAGCTGTTTCCATACAAAATTCCAAGTCACAGTCTGCAAATGAGGATTTGCAAGATACTAATTCCAAAGCAAGACCAGCTGAGCTGCTTGATTTGTTTTCATTTTCTTCCAGGGATTTAGAGTTTATTGTGAAATTTTCAATGGAGCATGGCTCGGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCTATCTATGGGCATGAGCTTGTTAAAGCTGGGATTACGCTGGCATTATTTGGGGGAGTACGAAAACATTCTATCGATCAGAATAAGGTTCCTGTAAGGGGCGACATTCATGTCATAATCGTCGGTGATCCTGGACTGGGCAAGAGCCAATTGCTGCAAGCAGCAGCCGCTGTTTCTCCACGAGGCATCTATGTCTGTGGTAATGCAACAACAAAAGCCGGCCTCACAGTAGCTGTAGTAAAGGATCCTACGACGAGTGACTATGCTTTTGAGGCCGGTGCTATAGTGCTGGCTGATAGTGGATTGTGTTGTATTGATGAGTTCGATAAAATGTCAGCTGAACATCAGGCTCTACTGGAGGCCATGGAACAACAGTGTGTCTCTATTGCAAAGGCAGGACTGGTCGCAAGTTTATCAGCTCGAACTTCTGTGTTAGCGGCAGCAAATCCAGTCGGCGGTCATTATAACCGTGCAAAAACTGTGAATGAAAACTTGAAAATGAGTGCCGCCCTGCTGTCCCGATTTGATCTAGTTTTCATACTGCTGGATAAACCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATAATGTCACTGCATGCTGGGAATGGACAACTAGCAGTCAAAAAGCAACGTAGAGATTTACCTTCTGATTCGAGAATTATGGTGCCACAGAATGCTGAAAGCATAGATTTAGGGGTTAGATCTGGTTCTTTAGTTTCAAAGTTGAGACTTGACCCACAAAGAGATAGTGACTTTGTTCCATTGCCTACTCAACTTCTTCGAAAATACATTGCTTATGCGAGGAGTTTTGTCTTCCCTAGGATGTCCAAACCCGCAGCAGAAATCCTACAAAAGTTTTACCTTAGACTGAGAGATCATAATACTTCAGCTGACGGTACACCGATAACGGCAAGGCAACTTGAAAGCCTAGTGAGGCTGGCTGAAGCTCGAGCTCGGCTAGACTTGAGAGAAGAAATAACGGCCCAGGATGCCATGGATGTAGTTGAAATAATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGATTTGTGGATTTTGGACGAAGTGGGGGAATGAGTCAACAGAAAGAGGCGAAACGCTTCCTAAGTGCCCTCAATAAACAATCAGAATTCCAGCAGAAAGATTGTTTTTCAATATCCGAAATATATAGTCTGGCGGATAGGATTGGCCTACAAGTGCCTGATATTGACACTTTCATCGATAATTTAAATAGCGTTGGTTATCTACTCAAAAAGGGACCCAAGACATTCCAGGTGTTATCCTCCTCATGTACACGAAGCCAATCAACTAGGGTAAAGGGCTAA 2406 0.431 MYGTPLERHIAGYGSLDPSGFVDVVGIYFPQQLFTVEQSWLDLTSALVSFFSSPSGQNLTSQVKNHHGSFALSLDFQQFQKICHIEEFYKMLEEKPKIALLCMSAAVHKVLITKWESDQLEDGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTVVKATTVRPLVTEMSFECGKCKQRIRRIFPDGKFSPPSICNLNGCKSKMFNPLRSTAQAIDFQKIRLQELLKPEDHEEGRVPRTVECELIQDLVDMCIPGDVLTVTGIIRGINTYMDIGGGKSKNRSQGFYYLYLEAVSIQNSKSQSANEDLQDTNSKARPAELLDLFSFSSRDLEFIVKFSMEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSIDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPTTSDYAFEAGAIVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHAGNGQLAVKKQRRDLPSDSRIMVPQNAESIDLGVRSGSLVSKLRLDPQRDSDFVPLPTQLLRKYIAYARSFVFPRMSKPAAEILQKFYLRLRDHNTSADGTPITARQLESLVRLAEARARLDLREEITAQDAMDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLSALNKQSEFQQKDCFSISEIYSLADRIGLQVPDIDTFIDNLNSVGYLLKKGPKTFQVLSSSCTRSQSTRVKG 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3060 801 CDD MCM8_WHD 722 787 - -
Prci3g3060 801 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 60 738 IPR031327 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 FunFam DNA helicase MCM8 isoform X1 167 218 - -
Prci3g3060 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 389 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 500 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 527 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 Gene3D - 324 709 IPR027417 -
Prci3g3060 801 CDD MCM8 350 699 - -
Prci3g3060 801 SMART AAA_5 390 542 IPR003593 GO:0016887
Prci3g3060 801 Pfam MCM AAA-lid domain 617 700 IPR041562 -
Prci3g3060 801 Coils Coil 461 481 - -
Prci3g3060 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 706 IPR027417 -
Prci3g3060 801 SMART mcm 136 701 IPR031327 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 ProSiteProfiles MCM family domain profile. 346 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 Pfam MCM P-loop domain 340 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Prci3g3060 801 Pfam MCM OB domain 140 268 IPR033762 -
Prci3g3060 801 Gene3D - 167 217 - -
Prci3g3060 801 SUPERFAMILY Nucleic acid-binding proteins 67 270 IPR012340 -
Prci3g3060 801 Gene3D - 140 269 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3060 Prci-Chr3 41996982 42004313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3060 16 787 Core DNA Replication Machinery Family AT3G09660 71.778 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3060 K10737 - gmx:100784549 1317.37