Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3049 ATGGCCAAAGAAAGAAATGTTGCATGGTTACTTCCAGATGATAACATCGCGGCCGTTAAAATGATATTTTTTCCTGGAAATGTTGACCTGGAGCCTGTGGATCAATGTGCTGAAGCAAAAAGCGAGGTTCGAAGAGAAGATCTAATCAATAATTACAGCTACCGAATCAAAATTACATGCATATCTCTGTGCGTATTGCGAACACACGGGAAGCAAAAACCAGTTGATGGAAAATCGCCTGCCAAGAAGAGGAAGTGGAAGGGAGTGGTTTCAGAAACAGTTGAGGGATTCAATGTCTTTAAGAAGTCCAAATCTGTGATACTTCAATCTAAAGATGAAGATAAAGATGTGGTCGAGTCCGTTCAGCAGACCAAAGAACAAAATAGGCAACTTGAGCGGGATGCTCTATTTAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATGTACCGTCCCCCCTTCAAAATTTTGAGGAGTTGAGCTCAAGATATAAATGTGAACCATACTTGTTACGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAAAGACAGGCTATTCCTGTTCTTTTACAGGTAAGGAATTTCTATTTAAATCGTGAATGTTTTGCCTGTGCAACTGGCTCTGGAAAAACCCTGGCGTTTGTGTGTCCTATGCTTATAAAGCTTAAGGATCCTTCAAAAAATGGTATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTTCCCAACTTATAGAGAGTGCAAGAAGCTGGTAAGGAAAAAGAAAAAGAATCCGTATTAAGTTGATGACTAAAGAGCTAGCGAGAAATGGTGATTTTTCTAAATTTGCATGTGATATACTTATATCCACCCCCTTGATTGCACTTGGCAATCGGAGGAAAAAGGTTGACCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCTGATAAGCTCTTTGAGCTTGGGTTATTTGAACAGATTGATTCTGTTATCCAAGCATGTTCAAACCCTTCAATAATACGTTCACTTTTCAGTGCCACTTTGCCTGATTCTGTTGAGGATCGTGCTCGGGAGCTTATGCATGATGCGGTTAGAGTTATTGTTGGTAGAAAGTAAGATTGGTGAATATGGGCATCTGAAACAATAAAACAAAAATTAGTCTTTACTGGAAGTGAAGAAGGAAAACTTTTGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAGGAACTCTATGGTGAACTAGAATTTGACAGCCTTAGAGTTGGTGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGAAATTCAGAGCTGGCAAACATGGGTTTTGATTGCCACTGATGTAGTCGCTAGAGGCATGGATTTCAAAGCTGTGAAGTGTGTCATTAACTATGATTTTCCAGATTCTGCTGCTGCTTACATTCATAGGATTGGTCGGTCTGGCAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGGAGACATGCCCTTGCTGCGTAATATAGCTAATCTCATGGCAGCATCAGGTTGTGACGTTCCGTCTTGGCTCCTGGAGCCCAAAAAGAAGTGGAAGAAACACCGCCCAAAAAGAGATTCCATCTCAACAAAACCGAATGTATAA 1677 0.4138 MAKERNVAWLLPDDNIAAVKMIFFPGNVDLEPVDQCAEAKSEVRREDLINNYSYRIKITCISLCVLRTHGKQKPVDGKSPAKKRKWKGVVSETVEGFNVFKKSKSVILQSKDEDKDVVESVQQTKEQNRQLERDALFRKRHNIHVSGYNVPSPLQNFEELSSRYKCEPYLLRNLAELGFREPTPIQRQAIPVLLQVRNFYLNRECFACAXTGSGKTLAFVCPMLIKLKDPSKNGIRAVILCPTRELSSQLIESARSWXGKRKRIRIKLMTKELARNGDFSKFACDILISTPFXIALGNRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDSVEDRARELMHDAVRVIVGRKXDWXIWASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELEFDSLRVGVIHSDLSQKEREDAVDXIQSWQTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEXDMPLLRNIANLMAASGCDVPSWLLELXKKKWKKHRPKRDSISTKPNV 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3049 563 CDD DEADc_DDX52 170 370 IPR044764 GO:0003724|GO:0005524|GO:0030490
Prci3g3049 563 Gene3D - 134 373 IPR027417 -
Prci3g3049 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 367 IPR014001 -
Prci3g3049 563 Pfam DEAD/DEAH box helicase 183 354 IPR011545 GO:0003676|GO:0005524
Prci3g3049 563 Gene3D - 377 548 IPR027417 -
Prci3g3049 563 Pfam Helicase conserved C-terminal domain 401 504 IPR001650 -
Prci3g3049 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Prci3g3049 563 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 118 549 - -
Prci3g3049 563 SMART helicmild6 423 504 IPR001650 -
Prci3g3049 563 SMART ultradead3 178 386 IPR014001 -
Prci3g3049 563 CDD SF2_C_DEAD 383 513 - -
Prci3g3049 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 543 IPR001650 -
Prci3g3049 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 515 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3049 Prci-Chr3 41938103 41944831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3049 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 30.102 4.44e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3049 K14779 - gmx:100800969 690.263