Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3036 ATGAGTCATAGGCATTTGTATAACACATCTCAAATGTTTGAGAGTGATCATGACCAAAATTGGAATTCTATGCATACTGACCAACAGTATGTGCACCTTGGTAGAGCTAGCACTTCAGAGAATGGTTCTTTCATTTACCCTGTGGAAAATATGTCTATAGATGGCATTTCTTTTACCTCTAATTGGAATTCTACCACAATGCCAAATGGATTTGCATCCTCAAGTCTCAATATTGAAGTACCACCTCATCAGTCTGACACATCGGGCGCTTCTCATGACCATTTTCTGCATTCATCAAGTGCTGCAGCCTTCTTTGCAGTTTCTGAAAATTATGCTCATCAGCCTTCTTCTTCCAATTATGATAGACAGCCATTTCACATCGTTGATGGTGGTTTTGTTGATCTTACAATGGGAAGTGGAAGAGGGCCTCACAAACGGAAGAGCCCTGGAATTCCTCCAGCCTGTGAGAGAGGTAGTACAAGTAGATACATAAAAACTGGAAGTTCAACTGATCTTCCTATGTCTTCAGAACTATGGCAGGAGAAGCCAAATATGGATTCTCAATTTGTGCCTCGAGATCAAGTTACCATGCCAACAACCTTTAGAGGTGGTGACCTTTCAATCAGGGGTGAGGGTTCCTTGAGAAACGTGAGAAGCCGTTCTGCACTTGATTTTGAATCCAACCTGGCCAGGACCCATTTATCTGGCAATCATTCACACAACTACTCCACTGGTCTACCCATTGACCATTCTAGCACAGTGGATCTCTCAGGTCAGAGTTCTAGTGCATTAACGAGGGATTGGAGCCAAATGAGCACATCTCATGCTCATGGCAGGTTATTACCAGATACAAGTGCTCTTAATTGTGAGACAAGTCACTTCCTTGTTGGGAGTAGTGCTAGTAATCCATCCGTAGATATTGGGGGTTACCAGCATGAATTTGGTACAAGCAGAAATCCTATTGTACCTCAAAGTTTTCATAATAATCTGACTCAGACAGCTAGGGGAGTGCGAAGCAACTTTTCACAAAGGTCTACTCCACCTTTTAGATCTTCTTCAAGCTTGCGCTTAGGGCATGTGGCACCATCAGATGATGGAATGCAAATGGTTGCTGGTAGTTACTCCTCAAGACACCCAAGGCCATTAACAACCATTGGCTGGAGGAACAGTGACAGAAATGGAAGGTCAAGGATATCTAGTGATAGATATCGACCATCAGTAGAGGCATCTCTCCACGATCGATTTTCTTCAGAGGGTTTCGTGATTGTTGATCGTGGGTTGCCATATGGATCTAGAAGTATGGTTGATCAGCATAGGGACATGAGGATGGACATAGACAACATGAGCTATGAGGAACTACTTGCCCTTGGAGAGAGGATTGGTCATGTCAGCACAGGCTTGTCTGAGGATTTGATTTCAAAATGCATGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAGGAGGAAGGAACTTGTGTTATCTGTTTGGAAGAATACAAGAATATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATAAGAAAGTGGTTATCTATGAAGAACAAATGTCCAATCTGCAAAGCTTCTGCTTTGCCAGACGACGTGAAGGAGAAATAA 1641 0.4302 MSHRHLYNTSQMFESDHDQNWNSMHTDQQYVHLGRASTSENGSFIYPVENMSIDGISFTSNWNSTTMPNGFASSSLNIEVPPHQSDTSGASHDHFLHSSSAAAFFAVSENYAHQPSSSNYDRQPFHIVDGGFVDLTMGSGRGPHKRKSPGIPPACERGSTSRYIKTGSSTDLPMSSELWQEKPNMDSQFVPRDQVTMPTTFRGGDLSIRGEGSLRNVRSRSALDFESNLARTHLSGNHSHNYSTGLPIDHSSTVDLSGQSSSALTRDWSQMSTSHAHGRLLPDTSALNCETSHFLVGSSASNPSVDIGGYQHEFGTSRNPIVPQSFHNNLTQTARGVRSNFSQRSTPPFRSSSSLRLGHVAPSDDGMQMVAGSYSSRHPRPLTTIGWRNSDRNGRSRISSDRYRPSVEASLHDRFSSEGFVIVDRGLPYGSRSMVDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKCMTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNKCPICKASALPDDVKEK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3036 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 539 IPR013083 -
Prci3g3036 546 ProSiteProfiles Zinc finger RING-type profile. 493 535 IPR001841 -
Prci3g3036 546 MobiDBLite consensus disorder prediction 337 362 - -
Prci3g3036 546 MobiDBLite consensus disorder prediction 381 402 - -
Prci3g3036 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 539 IPR045191 GO:0061630
Prci3g3036 546 MobiDBLite consensus disorder prediction 337 358 - -
Prci3g3036 546 CDD RING-H2_RNF24-like 491 538 - -
Prci3g3036 546 SMART ring_2 493 534 IPR001841 -
Prci3g3036 546 MobiDBLite consensus disorder prediction 140 174 - -
Prci3g3036 546 Pfam Ring finger domain 492 535 IPR001841 -
Prci3g3036 546 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 458 539 - -
Prci3g3036 546 SUPERFAMILY RING/U-box 482 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3036 Prci-Chr3 41846060 41853918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3036 1 544 C3H Transcription Factor Family AT2G37150 41.935 1.18e-112 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3036 - - gmx:100803627 826.624