Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3034 ATGATGTCCGGTGACCCTTTCTCCTTATCCACTACCATCGGAGGTTTTGCTCCTCAACAAAGCCCAAACCCTAACCCTAAACCTATTCCAAAGAAGAAGAGGAATCTCCCAGGAACACCGGATCCAGATGCGGAGGTCATCGCACTTTCACCGAAAACTCTCATGGCCACCAACAGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTCCACCGGAGGGGTCACAACCTGCCATGGAAGTTACGACAGAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATCTGTCCGGAGAAGACATGCGTCCACCATGACCCATCCAGAGCACTCGGAGACCTCACTGGCATAAAGAAGCATTTTAGCAGAAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCAGTCCAATCTGACTGGAAAGCTCACACCAAGACTTGTGGAACAAGAGAATACAAGTGTGATTGTGGGAACCTATTCTCCAGAAAAGACAGCTTCATCACACACAGAGCTTTCTGCGACGCCTTAGCAGAAGAGAGTGCGAGGCTCACCTCAGTCTCCCCGACAAATCTGAATTTCAAGAACGAAGGGAATACGATGAGCTCACAACATAGTCTGGCACTCGAAAACAACGCAGAAGTAATTTCTCAATTTGGCTCGCACGGATTTCGCCCAGATTTCAATGGAATGGGGATGGGCGGGAACTCAGCATGTGCGGACCAGCAAAGGGCAAGCTTGTCAATGTGGCTGAACCAGGGAAACAATGGTCTGGATGTGGGAGGGCTTTACGGGTCTTCTAGTTGTTCTTCGGGTTTGGGTGATCACATGGCACAAATGACGACCCAAGCTAATAACAACGCTTTTGGGTCTTGTAATTTTGGAATGCCAGCTTCGAGTTCAACAAACGCAGGACTTTTAGTATCCAGTGGGAGAAGAGGAGAAGCCATGTCAAAACCAGCCTCTCCCATGTCAGCGACTGCTCTACTTCAGAAGGCAGCTCAGATGGGTTCCACCAGAAGCAGCAACAACAATCCCTCTATTTTCAGTGGCACTCTAGGAGTGATGACCTCGTCTTCTTCCCATACGACGACGACTAATCTCAGTGATAACAACGCCAACAAGCACCGGAATTTCAGTTCAACTAGCAGTGCTGAGCCTGTGTTAGCAGATAACAACTTTAGCTCGTTCACTCATACAACGAACACTAATCTTGACCAACTCGTGACGCAGACCAGAACAAAGCAGAGTCAGGAGCAACACGTGCAATTGAAGCTTTACCCAGGTGGTTCGTCGGAACATAATTTAACAAGAGATTTTCTTGGCATGGGCGGTAGTGGTGCAGGAGGAGCCGGGAATCCTCCTCCATTTCTACCCCAAGAGCTGGTAAAGTTTGCGTCCATCGGCTCACCCATGGGTTTAACCCAATTCACCGCCAACCATTGA 1476 0.4837 MMSGDPFSLSTTIGGFAPQQSPNPNPKPIPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVSPTNLNFKNEGNTMSSQHSLALENNAEVISQFGSHGFRPDFNGMGMGGNSACADQQRASLSMWLNQGNNGLDVGGLYGSSSCSSGLGDHMAQMTTQANNNAFGSCNFGMPASSSTNAGLLVSSGRRGEAMSKPASPMSATALLQKAAQMGSTRSSNNNPSIFSGTLGVMTSSSSHTTTTNLSDNNANKHRNFSSTSSAEPVLADNNFSSFTHTTNTNLDQLVTQTRTKQSQEQHVQLKLYPGGSSEHNLTRDFLGMGGSGAGGAGNPPPFLPQELVKFASIGSPMGLTQFTANH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3034 491 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Prci3g3034 491 MobiDBLite consensus disorder prediction 1 20 - -
Prci3g3034 491 SMART c2h2final6 101 131 IPR013087 -
Prci3g3034 491 SMART c2h2final6 136 156 IPR013087 -
Prci3g3034 491 SMART c2h2final6 60 82 IPR013087 -
Prci3g3034 491 Gene3D Classic Zinc Finger 38 112 - -
Prci3g3034 491 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Prci3g3034 491 MobiDBLite consensus disorder prediction 315 397 - -
Prci3g3034 491 Pfam Zinc-finger double-stranded RNA-binding 60 82 IPR022755 -
Prci3g3034 491 FunFam protein indeterminate-domain 12-like 39 107 - -
Prci3g3034 491 Gene3D Classic Zinc Finger 114 193 - -
Prci3g3034 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Prci3g3034 491 MobiDBLite consensus disorder prediction 1 43 - -
Prci3g3034 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 458 IPR031140 -
Prci3g3034 491 MobiDBLite consensus disorder prediction 334 397 - -
Prci3g3034 491 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3034 Prci-Chr3 41819254 41821914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3034 1 479 IDZ Gene Family AT5G03150 47.348 4.08e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g3034 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3034 K25870 - gmx:100801182 567.77