Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3027 ATGGGTAACATTGGAAGTAGTAGCGTTAATAACAACCGCCGTAGGCACAGCGCAAGTGGGAGACGGAGTCATCCGCCTCCCCCTCCGCCGGTGACCCCACAGCCGGAAATCACGGCCAACCGATTCGTCTATCCTCCCGCTCCGCCCTATCCATCGCAATTCTCAAACACGAATCCCCCACCGTATTACCAGTACCCAGGTTTCTATCCCCCACCTCCAACGACTATGCCGGTTCCTCTGCCACCTCCGTACGATCAGCATCATCGCATGGGGTCTCATCCGCCTATGGACCCGGCATGGATGGGCGGACGTTACCCTTGTGGCCCTGCAATGCCTCCGCCCGCGCCCTACGTGGAGCATCAGAAGGCGGTTACGATCAGGAACGATGTTAATATTAAGAAGGAGACTCTGAGGATTGAGCCCGATGAGGAAAATCCGGGGCGGTTCCTTGTGGTATTCACATTTGATGCCACTGTGGCCGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGATGGCTGCATTCTTACGCCGACAAAGGAAAATCTTCTAGCACCTGTAACCGTGCAATTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACTGGTATTGACTTTTCGATGTTTGAGGAATCGGAATTGTTAAGAAGTGACATGGATGTTTACCCTCTAGCAGTAAAGGCAGATGCATCCTCTGGTAATCATGAAGGATCAAATGAAACTCTTACATCTGGTGGCACAAACTCTCAGGTTACTCAAGCAGTCTTTGAGAAAGGGAAAGGAGAGTTCCAAGTGAGGGTAATCAAGCAGATCTTGTGGGTGAATGGGATGAGGTATGAGTTGCAGGAGATATATGGTATTGGAAACTCAGTGGAGAATGACTTCGATGGAAATGACCCAGGGAAAGAGTGTGTCATCTGCTTATCGGAGCCTCAGGATACAACTGTTCTGCCCTGTCGACACATGTGCATGTGTAGCGGATGTGCGAAAGTTCTGAGGTTCCAGACAAACAGGTGCCCGATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAGATCAACAACGGGCCTGAAGAGACAACAATGTAA 1104 0.5045 MGNIGSSSVNNNRRRHSASGRRSHPPPPPPVTPQPEITANRFVYPPAPPYPSQFSNTNPPPYYQYPGFYPPPPTTMPVPLPPPYDQHHRMGSHPPMDPAWMGGRYPCGPAMPPPAPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGRFLVVFTFDATVAGSITILFFAKEGDGCILTPTKENLLAPVTVQFEQGLGQKFRQPAGTGIDFSMFEESELLRSDMDVYPLAVKADASSGNHEGSNETLTSGGTNSQVTQAVFEKGKGEFQVRVIKQILWVNGMRYELQEIYGIGNSVENDFDGNDPGKECVICLSEPQDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKINNGPEETTM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3027 367 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Prci3g3027 367 SMART ring_2 308 346 IPR001841 -
Prci3g3027 367 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Prci3g3027 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 357 IPR013083 -
Prci3g3027 367 FunFam probable E3 ubiquitin-protein ligase LOG2 292 357 - -
Prci3g3027 367 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Prci3g3027 367 MobiDBLite consensus disorder prediction 42 56 - -
Prci3g3027 367 SUPERFAMILY RING/U-box 307 353 - -
Prci3g3027 367 CDD mRING-HC-C3HC5_MGRN1-like 306 347 IPR045195 -
Prci3g3027 367 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3027 Prci-Chr3 41782071 41785683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3027 103 327 C3H Transcription Factor Family AT3G09770 65.517 1.26e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3027 - - cmax:111482503 492.656