Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3020 ATGATTACATTTCTGGAGTTGAAGGAGAAATTGAAAGACGAGGACAAATGCTTGGATAGTCAACTGTGGCATGCTTGCGCCGGTGCGATGGTACAAATGCCCTCGTTGAACTCCAAGGTATTTTACTTCCCTCAGGGTCACGCCGAGCATGCATGCGGACCTGTGGATTTCAAGAAGTGCCGGAGGTTTCCTCTTCCGCCCTACATTTTATGCACAGTCGAGTCTGTTAAATACATGGCTGATCCCGAGACAGATGAGGTATATGCGAAACTCGGGCTTGTTCCTTTGAATGGCAAGGAAGCTGATTATGATGAGTTTGAGGACGATGGCGTCGGAGGCGGCAACGATGGATCTGAAACTCAAGATAAACTTGCTTCGTTCGCAAAAACCTTGACGCAGTCGGATGCCAACAATGGGGGTGGTTTTTCGGTTCCTAGATACTGTGCAGAGACAATTTTTCCTCGTTTGGACTTTTCTGCGGATCCTCCTCTTCAGTATATTGAGGTTAAAGATGTTCACGGGGAATCGTGGAAGTTCAAGCACATTTACAGAGGCACGCCGAGGCGGCATCTTTTGACCACAGGATGGAGTCCATTTGTGAATAAGAAAAAACTCGTGGCTGGGGATTCAATAGTATTTTTGAGGGGACAAAACGGGGATCTCCACGTAGGAATTCGACGAGCTAAAAGAGGAAATGGTCGTCGATTCGAGTCTTCATCAATGTGGAATTCAGGGAGTGAAAACTGTTCCGTACCTTTTGATGGATTTTCGGCCTTCTTGAAGGGTAATGATAGCAAAAAACTGGCGATCAATAATGGTAGTGGCAATCGAATGATTGGCTCAAGGGGCAGCGTGGTGGCCAGTGGGAAAGTGAGAACCGAAGCGGTTATTGAAGCTGCGACTCTTGCTGCTAATGGACAGCCCTTTGAGGTGGTTTACTACCCTAGAGCAAGCACCCCCGAGTTCTGTATAAAGGCCTCCTTAGTCAAAACAGCACTGCAAATCAGGTGGTGTTCTGGAATGAGGTTCAAGATGGCTTTTGAGACAGAGGATTCTTCACGGATAAGTTGGTTCATGGGAACCATATCTTCAGTGCAGGTTGCTGATCCTCTACTCTGGCCTGATTCGCCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTGCTTCAAAATGTGAAACGGGTGAGCCCCTGGTTGGTTGAATTGGTATCCAACATGCCTGCAATCCCTCCACCTTTCTCACCGCCGAGGAAGAAAATGAGGTTGTCTCAGCATCCAGAGATTCCACTTGATACCAAAATTTTTGCTAGCAACCTCTTAGGTACCACCAACAACCTCTTCGGTTATCATCTACCAGAAACCACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTTTTTACGGTCTACCTTTACCCGATCTCCACCTCGATAAATTGCAGTCCCCCCTATATTTCACTGGTCTTCCACCTCTTGGTCATGCTTCTATGCAAACCAGGGTCTGTTATAACACAGCATTGCAAAATCATGGCGTGAGTGAGAATGCCTCTCACTTGATTTCCAAGGAAACTTCTGCCCATTCTTTGAAGGAACAGGATGACAAGAAGACGCCTCACCTCATGCTTTTTGGGAAAAAAATTCTTCCCGAGAAGCAGATATCCCAAGTTTTCATTCGTAATAGTTCATTACATGGAAATGCTCATGAAGGGGCCAATCTTTTTGATGATAAGCGCAAGGAATCTGATCGGTCCAAGTTTGACGGGGGTCACTGTTAG 1779 0.4688 MITFLELKEKLKDEDKCLDSQLWHACAGAMVQMPSLNSKVFYFPQGHAEHACGPVDFKKCRRFPLPPYILCTVESVKYMADPETDEVYAKLGLVPLNGKEADYDEFEDDGVGGGNDGSETQDKLASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDFSADPPLQYIEVKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKKLVAGDSIVFLRGQNGDLHVGIRRAKRGNGRRFESSSMWNSGSENCSVPFDGFSAFLKGNDSKKLAINNGSGNRMIGSRGSVVASGKVRTEAVIEAATLAANGQPFEVVYYPRASTPEFCIKASLVKTALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPLLWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIPPPFSPPRKKMRLSQHPEIPLDTKIFASNLLGTTNNLFGYHLPETTPAGMQGARHGFYGLPLPDLHLDKLQSPLYFTGLPPLGHASMQTRVCYNTALQNHGVSENASHLISKETSAHSLKEQDDKKTPHLMLFGKKILPEKQISQVFIRNSSLHGNAHEGANLFDDKRKESDRSKFDGGHC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3020 592 SUPERFAMILY DNA-binding pseudobarrel domain 121 232 IPR015300 -
Prci3g3020 592 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 558 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci3g3020 592 Pfam Auxin response factor 299 382 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci3g3020 592 MobiDBLite consensus disorder prediction 571 592 - -
Prci3g3020 592 FunFam Auxin response factor 337 410 - -
Prci3g3020 592 Gene3D - 336 410 - -
Prci3g3020 592 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Prci3g3020 592 SMART B3_2 127 229 IPR003340 GO:0003677
Prci3g3020 592 FunFam Auxin response factor 125 229 - -
Prci3g3020 592 MobiDBLite consensus disorder prediction 569 592 - -
Prci3g3020 592 CDD B3_DNA 126 227 IPR003340 GO:0003677
Prci3g3020 592 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Prci3g3020 592 Gene3D - 124 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3020 Prci-Chr3 41723437 41726838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3020 15 556 B3 DNA Binding Superfamily AT4G30080 56.014 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci3g3020 B3 1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3020 - - cave:132192247 774.622