Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3017 ATGAAAGAAAGCAAAGAAAGTCCCGTGTCCATGCCGACCTATAAGATGAATGGCAAACAGATGGACGTATGGAAGGAAAGGGAACTTTCGAGGGTCTTCTCTGAGGATTATGATTCCTCAGACAAGTTGATATTGGACCCCAGGGGACCAAGAGTGAACAGATGGAACAAAATCTTCTTAGTGGCATGTCTGGTTTCCTTATTTGTGGATCCCTTGTTCTTTTACTTGCCAGTGGCCAAGAAAGACAAGTGCATTGATTTATCCCTCAGCCTCGAAGTGTTTCTCACCGTAGTTCGCTCCATGGTTGATGCATTTTACATATTTCAGATTTATGTTCGCTTTCAAACAGCTTACGTTGCTCCTTCCTCTCGTGTATTTGGTAGAGGAGAGCTCATCATAGACCCTTCCAAGATATCATCCAAGTACCTTCAAAGAGATTTCTGGCTTGATGTTTTGGCTGCCCAACCTCTTCCTCAGGCGTTAATATGGCTTGTAATTCCAAATCTCAAGTGTTCACAAATGATTACTTCAAGGCATATACTGCGCCTCGCTACCATCTTCCAGTACCTTTTAAGGTTATGTCTCATCTTCCCTCTATCATCGCAAATCGTCAAGGCGAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCGTATAATCTCATGCTGTATATGCTAGCAAGTCATGTTTTAGGGTCGTGCTGGTACCTCCTATCAATTGAAAGGCAGGAGGAGTGCTGGAAAAAAGTTTGTTCTCTTCAACAACCGCACTGCCAGTATTATTATCTGGAGTGTGGAAGCGTAGGCGTTCCGCAGAGGGTAGCTTGGTTCAGAACAAGCAATGTCTCGGGTCTATGTGATCCCAGTAGTAATTTCTTTCAATTTGGCATTTTTGCTGACGCGCTGACTTCGGGAATCACGGGCTCCGAGTTCTTCATCAAGTACTTTTACTGTCTTTGGTGGGGGCTGAGGAATCTCAGCTCTCTGGGACAGAACCTCTTAACAAGCGCTGATATTGCTGAGATTAATTTTGCTGTGATCATTGCAATTCTTGGCCTGGTACTTTTCGCCCAGCTTATAGGCAACATGCAGATGTACCTGCAATCCACAACCATGAGGCTGGAAGAATGGAGAATAAGAAGGACAGATACAGAGAGATGGATGCGCCACAGGCAGCTACCTCGTGATCTGAAACAACACGTTCGACGATACGAGCAATTCAGATGGGTTGCGACCCGTGGAGTCGAAGAGGAAGTCATCCTCAGAGACCTTCCTGCAGATCTCAGACGTGACATCAAACGTCACCTCTGCGTCAATCTAGTCCGACAAGTACCACTATTTGATCAGATGGATGAGAGGATGCTGGATGCCATATGCGAGAGGCTAAAGCCATCCCTGTGCACCCCCGGGACGAGGCTAGTTCGCGAAGGTGATCCTGTGAATGAGATGCTCTTCATAGTTCGAGGTCGCTTGGATTCATACACAACCAATGGCGGCCGAACCGGGTTCTTCAATTCCTGCAGAATAGGGCCGGGTGATTTCTGCGGCGAAGAGCTGCTGCCATGGGTTCTGGACCCTCGTCCCAGCGTGGTGCTTCCTTCGTCGACTCGCACCGTAAAAGCCATAACCCACGTGGAAGCTTTTGCACTCATAGCTGAGGACTTACAGTTCGTGGCAGACCAGTTCCGGAGACTGCACAGCAAACAGCTGAGGCACACCTTTAGGTTTTACTCTCAGCAATGGAGGACATGGGCTGCTTGCTTCATTCAAGCGGCTTGGTTTAACTATAAGAGGAGAAGAGAGGCCGGTGAGCTCAAGAAGCAGCAGAATCTCGTGGCGGTATTCTCTGTGCCTCCAAGTTGCACCGCCATGGAATATTTCTCTGCACCTCTGCAACCCCGCGCGGAGTCCATCATTACGAGGTATCCCATGAGAGGTGGGAGCTTACGATATGGTTCTGATCTTGACGTTCTTGGTTCGTTGAGAAAGCCTGTTGAACCTGACTTCACCGTGCAAGATACATGA 2028 0.4803 MKESKESPVSMPTYKMNGKQMDVWKERELSRVFSEDYDSSDKLILDPRGPRVNRWNKIFLVACLVSLFVDPLFFYLPVAKKDKCIDLSLSLEVFLTVVRSMVDAFYIFQIYVRFQTAYVAPSSRVFGRGELIIDPSKISSKYLQRDFWLDVLAAQPLPQALIWLVIPNLKCSQMITSRHILRLATIFQYLLRLCLIFPLSSQIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSCWYLLSIERQEECWKKVCSLQQPHCQYYYLECGSVGVPQRVAWFRTSNVSGLCDPSSNFFQFGIFADALTSGITGSEFFIKYFYCLWWGLRNLSSLGQNLLTSADIAEINFAVIIAILGLVLFAQLIGNMQMYLQSTTMRLEEWRIRRTDTERWMRHRQLPRDLKQHVRRYEQFRWVATRGVEEEVILRDLPADLRRDIKRHLCVNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTRLVREGDPVNEMLFIVRGRLDSYTTNGGRTGFFNSCRIGPGDFCGEELLPWVLDPRPSVVLPSSTRTVKAITHVEAFALIAEDLQFVADQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWFNYKRRREAGELKKQQNLVAVFSVPPSCTAMEYFSAPLQPRAESIITRYPMRGGSLRYGSDLDVLGSLRKPVEPDFTVQDT 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3017 675 Gene3D Helix hairpin bin 374 438 - -
Prci3g3017 675 CDD CAP_ED 447 578 IPR000595 -
Prci3g3017 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 620 - -
Prci3g3017 675 SUPERFAMILY Voltage-gated potassium channels 46 369 - -
Prci3g3017 675 Gene3D - 58 371 - -
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 410 417 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 540 548 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 227 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 360 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 342 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 316 333 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Prci3g3017 675 SUPERFAMILY cAMP-binding domain-like 377 569 IPR018490 -
Prci3g3017 675 Gene3D Jelly Rolls 445 565 IPR014710 -
Prci3g3017 675 ProSiteProfiles cAMP/cGMP binding motif profile. 447 532 IPR000595 -
Prci3g3017 675 Pfam Ion transport protein 55 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci3g3017 675 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Prci3g3017 675 SMART cnmp_10 447 578 IPR000595 -
Prci3g3017 675 Pfam Cyclic nucleotide-binding domain 470 557 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3017 Prci-Chr3 41702297 41705132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3017 25 673 Ion Channels AT2G28260 65.231 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3017 K05391 - gmx:100815543 1055.43