Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3015 ATGCAAATTAAACGAAACAACTGGATAACAGATAGTAGATACACTTGTATATATGGGCTTCCAATACGTCTTCTTCCCGGTAAAGAATCACAGGTTGAAGCAGAGCTCTATGGCTTCAGGTTTCATGATGATCTCGAGACTGAGATGAAAGAAAGCAAAGAAAGTCCCGTGTCCATGCCGACCTATAAGATGAATGGCAAACAGATGGACGTATGGAAGGAAAGGGAACTTTCGAGGGTCTTCTCTGAGGATTATGATTCCTCAGACAAGTTGATATTGGACCCCAGGGGACCAAGAGTGAACAGATGGAACAAAATCTTCTTAGTGGCATGTCTGGTTTCCTTATTTGTGGATCCCTTGTTCTTTTACTTGCCAGTGGCCAAGAAAGACAAGTGCATTGATTTATCCCTCAGCCTCGAAGTGTTTCTCACCGTAGTTCGCTCCATGGTTGATGCATTTTACATATTTCAGATTTATGTTCGCTTTCAAACAGCTTACGTTGCTCCTTCCTCTCGTGTATTTGGTAGAGGAGAGCTCATCATAGACCCTTCCAAGATATCATCCAAGTACCTTCAAAGAGATTTCTGGCTTGATGTTTTGGCTGCCCAACCTCTTCCTCAGGCGTTAATATGGCTTGTAATTCCAAATCTCAAGTGTTCACAAATGATTACTTCAAGGCATATACTGCGCCTCGCTACCATCTTCCAGTACCTTTTAAGGTTATGTCTCATCTTCCCTCTATCATCGCAAATCGTCAAGGCGAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCGTATAATCTCATGCTGTATATGCTAGCAAGTCATGTTTTAGGGTCGTGCTGGTACCTCCTATCAATTGAAAGGCAGGAGGAGTGCTGGAAAAAAGTTTGTTCTCTTCAACAACCGCACTGCCAGTATTATTATCTGGAGTGTGGAAGCGTAGGCGTTCCGCAGAGGGTAGCTTGGTTCAGAACAAGCAATGTCTCGGGTCTATGTGATCCCAGTAGTAATTTCTTTCAATTTGGCATTTTTGCTGACGCGCTGACTTCGGGAATCACGGGCTCCGAGTTCTTCATCAAGTACTTTTACTGTCTTTGGTGGGGGCTGAGGAATCTCAGCTCTCTGGGACAGAACCTCTTAACAAGCGCTGATATTGCTGAGATTAATTTTGCTGTGATCATTGCAATTCTTGGCCTGGTACTTTTCGCCCAGCTTATAGGCAACATGCAGATGTACCTGCAATCCACAACCATGAGGCTGGAAGAATGGAGAATAAGAAGGACAGATACAGAGAGATGGATGCGCCACAGGCAGCTACCTCGTGATCTGAAACAACACGTTCGACGATACGAGCAATTCAGATGGGTTGCGACCCGTGGAGTCGAAGAGGAAGTCATCCTCAGAGACCTTCCTGCAGATCTCAGACGTGACATCAAACGTCACCTCTGCGTCAATCTAGTCCGACAAGTACCACTATTTGATCAGATGGATGAGAGGATGCTGGATGCCATATGCGAGAGGCTAAAGCCATCCCTGTGCACCCCCGGGACGAGGCTAGTTCGCGAAGGTGATCCTGTGAATGAGATGCTCTTCATAGTTCGAGGTCGCTTGGATTCATACACAACCAATGGCGGCCGAACCGGGTTCTTCAATTCCTGCAGAATAGGGCCGGGTGATTTCTGCGGCGAAGAGCTGCTGCCATGGGTTCTGGACCCTCGTCCCAGCGTGGTGCTTCCTTCGTCGACTCGCACCGTAAAAGCCATAACCCACGTGGAAGCTTTTGCACTCATAGCTGAGGACTTACAGTTCGTGGCAGACCAGTTCCGGAGACTGCACAGCAAACAGCTGAGGCACACCTTTAGGTTTTACTCTCAGCAATGGAGGACATGGGCTGCTTGCTTCATTCAAGCGGCTTGGTTTAACTATAAGAGGAGAAGAGAGGCCGGTGAGCTCAAGAAGCAGCAGAATCTCGTGGCGGTATTCTCTGTGCCTCCAAGTTGCACCGCCATGGAATATTTCTCTGCACCTCTGCAACCCCGCGCGGAGTCCATCATTACGAGGTATCCCATGAGAGGTGGGAGCTTACGATATGGTTCTGATCTTGACGTTCTTGGTTCGTTGAGAAAGCCTGTTGAACCTGACTTCACCGTGCAAGATACATGA 2172 0.4751 MQIKRNNWITDSRYTCIYGLPIRLLPGKESQVEAELYGFRFHDDLETEMKESKESPVSMPTYKMNGKQMDVWKERELSRVFSEDYDSSDKLILDPRGPRVNRWNKIFLVACLVSLFVDPLFFYLPVAKKDKCIDLSLSLEVFLTVVRSMVDAFYIFQIYVRFQTAYVAPSSRVFGRGELIIDPSKISSKYLQRDFWLDVLAAQPLPQALIWLVIPNLKCSQMITSRHILRLATIFQYLLRLCLIFPLSSQIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSCWYLLSIERQEECWKKVCSLQQPHCQYYYLECGSVGVPQRVAWFRTSNVSGLCDPSSNFFQFGIFADALTSGITGSEFFIKYFYCLWWGLRNLSSLGQNLLTSADIAEINFAVIIAILGLVLFAQLIGNMQMYLQSTTMRLEEWRIRRTDTERWMRHRQLPRDLKQHVRRYEQFRWVATRGVEEEVILRDLPADLRRDIKRHLCVNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTRLVREGDPVNEMLFIVRGRLDSYTTNGGRTGFFNSCRIGPGDFCGEELLPWVLDPRPSVVLPSSTRTVKAITHVEAFALIAEDLQFVADQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWFNYKRRREAGELKKQQNLVAVFSVPPSCTAMEYFSAPLQPRAESIITRYPMRGGSLRYGSDLDVLGSLRKPVEPDFTVQDT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3015 723 Gene3D Jelly Rolls 493 613 IPR014710 -
Prci3g3015 723 SUPERFAMILY cAMP-binding domain-like 425 617 IPR018490 -
Prci3g3015 723 SMART cnmp_10 495 626 IPR000595 -
Prci3g3015 723 Gene3D Helix hairpin bin 422 486 - -
Prci3g3015 723 Pfam Cyclic nucleotide-binding domain 518 605 IPR000595 -
Prci3g3015 723 Gene3D - 106 419 - -
Prci3g3015 723 SUPERFAMILY Voltage-gated potassium channels 94 417 - -
Prci3g3015 723 CDD CAP_ED 495 626 IPR000595 -
Prci3g3015 723 FunFam Cyclic nucleotide-gated ion channel 1 493 611 - -
Prci3g3015 723 ProSiteProfiles cAMP/cGMP binding motif profile. 495 580 IPR000595 -
Prci3g3015 723 Pfam Ion transport protein 103 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci3g3015 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3015 Prci-Chr3 41701399 41705132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3015 73 721 Ion Channels AT2G28260 65.231 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3015 K05391 - gmx:100815543 1063.14