Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3014 ATGTCTACCTCTGCCGCTTCCTTGGCCCTTCCCACCTTCACTTCCAGATTCCGGCCACGATGCTTTGCCAGACAAGCCTTGCTCTCTTCCCATTCCTCTTCTCTCCGACTAAAATCCAGGCCCTTTTCATTGTCTGCCTCTTTTCTTCGATTCCACACGCCTTCACCCTCTCGTTTTATCCCCAGTGTTGCTCTTTCTTCTGAGTTCGAACAAGAAGAGATTGTGACTGATGAAGACGAGCCTAGCTACTCCCCCGACCTCAAACTCTTCGTCGGTAATCTTCCCTTCAGCGTTGACAGTGCCCAGCTGGCTGAATTGTTCGAGAGCGCTGGAACTGTCGAGATGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTCGGTTTTGTGACCATGTCTACCTCTGAGGAAGTTGAAGCAGCTGCTCAACAATTCAATGGCTATGAACTTGATGGACGGGCGTTGAGAGTAAATTTTGGACCTCCTCCCCGGAAGGAGAATGCCCCTTTCAGAGGTTCAAGAGGCGGTTATGCTTCAGATACTGGAAACCGCGTTCATGTTGGTAATCTTGCATGGGGTGTTGATAACTTGGCGCTTGAGACTCTGTTTGCTGAGCAGGGAAAGGTTTTGGAAGCAAAGGTAATTTATGACAGAGAAAGTGGAAGGTCAAGAGGATTTGGATTTGTGACTTACGGCAGTGCTGAAGAGGTTAACGGTGCTATTGAGTCCTTAAACGGTGTGGACTTGAATGGCAGAGCTATTCGAGTGTCCTTAGCAGATGCTAAGCCAAGGCGTCAATTTTGA 813 0.4834 MSTSAASLALPTFTSRFRPRCFARQALLSSHSSSLRLKSRPFSLSASFLRFHTPSPSRFIPSVALSSEFEQEEIVTDEDEPSYSPDLKLFVGNLPFSVDSAQLAELFESAGTVEMVEVIYDKMTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPRKENAPFRGSRGGYASDTGNRVHVGNLAWGVDNLALETLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGSAEEVNGAIESLNGVDLNGRAIRVSLADAKPRRQF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3014 270 PANTHER OS02G0815200 PROTEIN 29 268 - -
Prci3g3014 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Prci3g3014 270 CDD RRM2_NsCP33_like 187 262 - -
Prci3g3014 270 Gene3D - 184 270 IPR012677 -
Prci3g3014 270 Gene3D - 66 183 IPR012677 -
Prci3g3014 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 264 IPR000504 GO:0003723
Prci3g3014 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Prci3g3014 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 159 IPR000504 GO:0003723
Prci3g3014 270 SUPERFAMILY RNA-binding domain, RBD 182 269 IPR035979 GO:0003676
Prci3g3014 270 SUPERFAMILY RNA-binding domain, RBD 81 186 IPR035979 GO:0003676
Prci3g3014 270 FunFam Ribonucleoprotein A, chloroplastic 65 186 - -
Prci3g3014 270 SMART rrm1_1 187 260 IPR000504 GO:0003723
Prci3g3014 270 SMART rrm1_1 88 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3014 Prci-Chr3 41696479 41698863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3014 89 269 Eukaryotic Initiation Factors Gene Family AT1G49760 27.957 1.97e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3014 - - hbr:110667283 358.221