Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2985 ATGGGCAGAGCTCCTTGCTGCGACAAGGCAAATGTAAAGAAAGGGCCATGGTCTCCCGAAGAAGATGCCAAGCTAAAGGAGTACATAGAGAAACATGGCACTGGTGGGAATTGGATCTCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGCTGCAGACTAAGATGGCTTAACTATCTCAGACCTAACATTAAGCACGGCCAGTTCTCTGATGATGAAGATAGAATCATCTGCAACCTCTTCGCTAGCTTTGGAAGCAGGTGGTCGATAATAGCAGCTCATTTACCTGGGAGGACCGACAACGATATCAAGAATTATTGGAACACCAAGCTTAAGAAGAAAATGATGCCCATGAATCCTTCATCTCAGGGGAGTAAGCCTCCTCATCAACCCACCCTTTTAACCATTCTTCAAAATTCCACACCAGCTTCACCATTATTATTCTCAGACAGAACCAACTCTTGCTACCACCATGCTAACGCATCATTCACAGGCTCTTCTAATCTTTTGAGTGGTAACGCGTTTACTTCTGCAAACTTCACTTTTCAACACCATGATTGTAGTTTTAAGGAACCTATTCGGAATCAGCAAGTGTCTATGGTTGGGGGTGAGGCTGCTAGTTGCAGTTCTTCTGATGGAAGCTGCAATAACCAGATCACTCATATCAGAGAAGCAGAGTTTGTGTACGGAAGATATGGAACTTTAATCCAACAGGTTGGTGGTGCGCATAATTATTACCACAACAATGGATTGTGGGGAGAGAGTTTATTAGATTATGGGATGGATGAGATTAAACAATTAGTAAGCACAGGTAGTTGCAGCAACTTGTTTTTCGATGAGAAGACAGAGGAAAGGGTTGTGCACTACTGA 876 0.4326 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGQFSDDEDRIICNLFASFGSRWSIIAAHLPGRTDNDIKNYWNTKLKKKMMPMNPSSQGSKPPHQPTLLTILQNSTPASPLLFSDRTNSCYHHANASFTGSSNLLSGNAFTSANFTFQHHDCSFKEPIRNQQVSMVGGEAASCSSSDGSCNNQITHIREAEFVYGRYGTLIQQVGGAHNYYHNNGLWGESLLDYGMDEIKQLVSTGSCSNLFFDEKTEERVVHY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2985 291 Gene3D - 7 68 - -
Prci3g2985 291 PANTHER OS09G0431300 PROTEIN 1 220 - -
Prci3g2985 291 CDD SANT 71 113 IPR001005 -
Prci3g2985 291 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci3g2985 291 Gene3D - 69 134 - -
Prci3g2985 291 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci3g2985 291 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Prci3g2985 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci3g2985 291 CDD SANT 16 62 IPR001005 -
Prci3g2985 291 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Prci3g2985 291 FunFam Transcription factor RAX3 7 68 - -
Prci3g2985 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci3g2985 291 SMART sant 13 64 IPR001005 -
Prci3g2985 291 SMART sant 67 115 IPR001005 -
Prci3g2985 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2985 Prci-Chr3 41458227 41460011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2985 1 118 MYB Transcription Factor Family AT5G57620 85.593 1.24e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g2985 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2985 K09422 - gmx:778084 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2818 1 47007966 47009675 Prci3g2985 3 41458227 41460011 CCT