Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2961 ATGGAGGATATCATTCAGGAGCAAGTTGTGGTGGCGTGCAGGGATCGGGCACAGATCATGAAGGGCAAGCTCACCAAGCGTCAAAGGACACCGTCCCCGATCAGGCTAGCCATAGGCTTGCCTTCTGCAACGGACAGCAGCAGTGAGGTCTGTTCCGGTGGGTCTGACGTCCCGAACACGTCGTCATCTGAGTTGAGAGATAACACGCAGTCCACGACGACAACGTCGCCGACGGAGGAAGAGGAGGACATGGCCAATTGCTTGATTCTTTTGGCTCAAGGGAAATTCTCACATCCCGTGGCCGTACCTAAGGATGGGGCATACCTTTACCAGTGCAGGACTTGCGACCGAGGCTTCCCTTCGTTCCGAGCGCTTGGCGGACACAGAGCCAGACACAAGAAGATGAAGCCCAGCCCAGAAGAAAATAATCAAGATGGTGGGTGCGATGAGTACTGCACCACCACTGCTCTCTCCTTGAAATTATCCAACAGGGTTTCTTTGTGTAGCGGTAAATCGTCCAAAGTTCACGAGTGTTCCATTTGCGGGGCTGACTTCTCTTCCGGGCAAGCCTTGGGGGGTCACATGAGAAGGCACAGAACTTTGGTGAACGAGTCATCCCAGGACGTCAAGAAACCCAGAAACGTCTTCAAGCTGGACTTGAATCTTCCGGCTCCTGATGAGGATCATGATCACTCGGAATCCAAGTTTCCTTTTCACTCCAAAGACTCCGTCCTTGTCTTCTCGGCGTCTCCTTTGGTGGATTGTCATTACTGA 774 0.5284 MEDIIQEQVVVACRDRAQIMKGKLTKRQRTPSPIRLAIGLPSATDSSSEVCSGGSDVPNTSSSELRDNTQSTTTTSPTEEEEDMANCLILLAQGKFSHPVAVPKDGAYLYQCRTCDRGFPSFRALGGHRARHKKMKPSPEENNQDGGCDEYCTTTALSLKLSNRVSLCSGKSSKVHECSICGADFSSGQALGGHMRRHRTLVNESSQDVKKPRNVFKLDLNLPAPDEDHDHSESKFPFHSKDSVLVFSASPLVDCHY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2961 257 Pfam C2H2-type zinc finger 175 199 - -
Prci3g2961 257 Pfam C2H2-type zinc finger 110 134 - -
Prci3g2961 257 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Prci3g2961 257 Gene3D Classic Zinc Finger 108 198 - -
Prci3g2961 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Prci3g2961 257 SMART c2h2final6 110 132 IPR013087 -
Prci3g2961 257 SMART c2h2final6 176 198 IPR013087 -
Prci3g2961 257 SUPERFAMILY beta-beta-alpha zinc fingers 109 198 IPR036236 -
Prci3g2961 257 MobiDBLite consensus disorder prediction 43 81 - -
Prci3g2961 257 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Prci3g2961 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Prci3g2961 257 PANTHER ZINC FINGER PROTEIN ZAT5 67 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2961 Prci-Chr3 41251041 41252234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2961 19 257 C2H2 Transcription Factor Family AT5G03510 40.070 2.90e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g2961 zf-C2H2_6 5.8e-12 CL0361