Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2950 ATGGGATTCAACAGAATCCTCTTCTGGTCACTTGCCTTTTTCACTTTTTCCCTTTCCATCATCATTGTTCGCCATTACACGCCACCTTCCCTCACCACCATCGCTTCCATTAATCCTCAAAGAAATTTCAAACAACATGTTATCTTAAGTAGGATTATAAAGCTCAGTGGGGCTGAAGACTTTGTGTCTCTAATAACAAGATTTGCGAGGCTTCACCCCAGAAGGAAGCAGAAGGAAAAATGTGACAAGGCCACCTGGGATTCTGATCTTATTTTGGACTACAATGTGAGTCTTGTTTTGACGGTTAGCTTAAAGGATTGTGGAAATTTTAGCAGCATACAAAAGGCATTGAATGCTGTTCCCGAATCGAGTCCTGATAAAACGCTTATCATTATTGATTCTGGCATATACAGAGAGAAGGTAGTGGTGGAGGCAAGCAAAACAAATTTGATATTGCAAGGTCAAGGATATTTGAACACAATCATAGAATGGAATGATACTGCCAACTCGACAGGAGGGACCTTTAATAGTTACACAATTGGAGTCTTTGCTTCTAAGTTTCTTGCTTACAAGATTAGTTTTAAAAATACGGCCCCAGCACCGTCGCCAGGTATGATAGGAGCACAAGCAGTTGCATTAAGAGTGAGCGGTGATGAAGCAGCATTCTACGAATGTGGAATGTATGGTGCTCAAGACACCCTCAATGATGATAGTGGAAGACATTATTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGGAATGCAAGATCTTTTTACGAGGATTGTACCATAAACTCTATATCAGCTGAAGAAGGAGCTATGATTTCTGGGTCCATCACAGCTCAGGCAAGACAGTCGGAGAATGAAGAAACTGGATTTTCATTTGTGAATTGTAAGATTATTGGGAGTGGAAAAGTGTGGCTTGGAAGAGCATGGGGAGCATATGCCACTGTGGTCTTCTCGAAAACATTTATGTCTGAAGTTGTTGCTCCTGAAGGATGGAATGATTGGTCTAATTCTACCAGAGACATGACTGTCTTTTTTGGAGAATATCATTGTCTTGGAGGTGGAGCCAACTACTCGTCTAGAGTCACATATGGAAAGCAACTTAAAGACTATGAAGCAGGACGCTTCATGAATGTTTCATATATTGATGGAAACGATTGGCTTCTTGATCATCGAACAAACTTAGATGTTCTTCTAATGTCAGAAAAATAG 1230 0.4016 MGFNRILFWSLAFFTFSLSIIIVRHYTPPSLTTIASINPQRNFKQHVILSRIIKLSGAEDFVSLITRFARLHPRRKQKEKCDKATWDSDLILDYNVSLVLTVSLKDCGNFSSIQKALNAVPESSPDKTLIIIDSGIYREKVVVEASKTNLILQGQGYLNTIIEWNDTANSTGGTFNSYTIGVFASKFLAYKISFKNTAPAPSPGMIGAQAVALRVSGDEAAFYECGMYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNARSFYEDCTINSISAEEGAMISGSITAQARQSENEETGFSFVNCKIIGSGKVWLGRAWGAYATVVFSKTFMSEVVAPEGWNDWSNSTRDMTVFFGEYHCLGGGANYSSRVTYGKQLKDYEAGRFMNVSYIDGNDWLLDHRTNLDVLLMSEK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2950 409 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Prci3g2950 409 Pfam Pectinesterase 101 391 IPR000070 GO:0030599|GO:0042545
Prci3g2950 409 SUPERFAMILY Pectin lyase-like 97 394 IPR011050 -
Prci3g2950 409 Gene3D - 94 402 IPR012334 -
Prci3g2950 409 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 93 394 - -
Prci3g2950 409 FunFam Pectinesterase 94 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2950 Prci-Chr3 41116603 41120033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2950 92 394 Carbohydrate Esterase AT1G05310 51.961 1.19e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2950 - - gmx:100802034 595.89