Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2949 ATGAAGCAAGACTCCCGATTACTATCTGTTTGGGAAGGCCAATCTCATGATGCATTCGTTCCAACTTCGGCTTCGGAAGCTCAATCTGGTTCTCACTTCCAGACGATGCTCGATGCTCAGGTCTCTGGGAATGGTAGTTCTAGCATGGTTGGAGGTGCTGTGGTGAATGGTTATATTGTTTATACTCGACAAAGGAAGGCTCGGCGTTTGTGTGATGGGTCTTCTGAGAACGAAAAGTTTAAGAGGCTAAAGACTTCTGTAGAACCGCAAACAAATGCGCACATTCCAGGGATGGAAGGTGGAGGCGGTGTGGAGGTAGATAATGTAGAACATAGAATAGAAATTGGAGTCAGTTGCAATGTGGAGAAGCCTAAAAGCTACAATGAGCTAGAGAACGAGCCCAGACAAGATCGTGCTGGGGAAGGTGGCTTCAATGGTGTTTCTGTAGTAATGTCTAACGGTGACGGTGTGCAGAAAGATGCTGGAGTTAAGACATTGAAGCGCTATTCTCGATCAGCTTTGAAAACAAAGGTTCGCTCTTCTGGCAAGGCGGGGAGTGTTTCAGAATCTTCCCAGGCTGAAAATACTAAATCAGACGGGAAGGTGAACGCTGCCCCCATCGCATTAACAGCTCCAAGAAACAAATTGGAATTGAAGATGTCGAAAAAGATTGTGCTCAACAAGAAGCCTATGACCGTCAAGGAGCTCTTCGACACTGGTCTACTGGATGGTGTTCCTGTAGTTTATATGGGCGGGAAGAAGGCTTCGGGACTTCGAGGCATTATTAAAGATGGGGGAATATTGTGTTCATGCTGTCTTTGCAATGGACGCAAGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAAAGCGTATAAGCGAGCGGCACAATACATTTGCCTGGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCGTGCAGAGGAGCTCCCTTACATACTCTGGAGGCGACAATACAAAGCGTTGTTTGTTCTCCACCTGATGAAAAGTATTTCACTTGTAAAATGTGCAAGGTATGTTTCCCTCCTTCATGTGTGGAAAGAGTCGGGTCTATATGCAGTTCTTGCAAGGAGACCAAGGAATCTCAAGACAGTTCTATTGATAAAGTGGGCAAAAGAGTCAGGTCTCCTAGAGCGCTTTCTGTTTCTAAGCAATCTGATATTTCTGAGAAGCGTATCTCTTCACAGATTAAGAGACACTGGAAGAAAAGGACAAAGTCGCCAAAATGGGTTAGCCGTGCAAAGTCTTCCAAGAATTCTTCAGTGACTATCCTATCACGAAAGAAGAGTCTTTGGAAGATGAAAAAGAAGTCCTCCAAATTGTCAGTGAAATTGAAGACTGCAAGAACTACTTCAAATTCAATGCCTTCATCTTCACCAAACAAGAGTCACTGGAGGATCACTAAGAAGCACCAGCAGTTGCATAAGTTAGTCTTTGAGGAAGGTGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGGCAGAAACTGCTCGAGGGTTACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCGCAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAAGATCGCAAATACTCTGCAAAGGATAATGATGATTTATGCATTATTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCTTTTCATAAAGAATGTGCATCTCTGTTGAGCATTCCGCGTGGTAATTGGTACTGCAAGTTTTGCCAAAACATGTTCCAAAGAGAAAGATTTGTGGCACACAATGTCAATGCTGTGGCAGCTGGGAGAGTTGAAGGAGTTGATCCTATTGAGCAGATAACCAAAAGATGTGTGCGCATTGTCGAAGATGTTGATACTGAGCTCAATGGATGTGCTTTATGCAGGGCTTGTGACTTCAGCAAATCAGGATTTGGTCCACGAACAATAATAATCTGTGATCAGTGTGATAAAGAATTTCATGTTGGCTGCTTGAGGGATCATAAAATGTCATTTTTGAAGGAATTGCCAGAAGGGGATTGGTTTTGTTGCCATGATTGCTCAACCATACATTCTACTTTTCAGAACCTCCTGGTTGGGGGGGCTGAGAAACTTCCAGAACCTCTCTTGGATGTTATAAAGAAAAAGCAAGAGGAAAAAGGTTTAGAATCCCTTAGTGATATTGATGTGAAATGGAGGCTTCTTAGGGGCAAAATTGCTTCTCCTGAAACTAGGCCATTTCTTTTGCAGGCTGTCTCAATCTTTCATGAATGCTTTGACCCTATAGTTGATTCAATTACTGGACGCAATCTTATTACGGCCATGATATATGGAAGGACTGTTCGGAGACAAGAGTTTGGAGCGATGCATTGTGCAATATTAATGGTCAATTCAACTGTGGTATCCGCTGCCTTGCTTCGAATTTTTGGAAGTGATTTTGCAGAGCTCCCACTAGTTGCAACTCGTAGTGTTAACCATGGAAAGGGGTACTTCCAAATGCTATACTCCTGCATCGAGAAATTGCTGACTTCTTTAAACGTGAAGAACCTTGTGTTGCCAGCTACCGCTACTGCAGAGTCCATTTGGATTGAGAAATTCGGGTTCACGAAGATGACAGCAGATGAGCTTAGCAACTACAGAAAGAACTACCAGCAGATGGTGATATTTCAGGGGACATCCATGCTTCATAAAATGATTGCTCCGTGTCCGGATATCAAAAATTCTTCATGA 2829 0.4383 MKQDSRLLSVWEGQSHDAFVPTSASEAQSGSHFQTMLDAQVSGNGSSSMVGGAVVNGYIVYTRQRKARRLCDGSSENEKFKRLKTSVEPQTNAHIPGMEGGGGVEVDNVEHRIEIGVSCNVEKPKSYNELENEPRQDRAGEGGFNGVSVVMSNGDGVQKDAGVKTLKRYSRSALKTKVRSSGKAGSVSESSQAENTKSDGKVNAAPIALTAPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVPVVYMGGKKASGLRGIIKDGGILCSCCLCNGRKVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQSVVCSPPDEKYFTCKMCKVCFPPSCVERVGSICSSCKETKESQDSSIDKVGKRVRSPRALSVSKQSDISEKRISSQIKRHWKKRTKSPKWVSRAKSSKNSSVTILSRKKSLWKMKKKSSKLSVKLKTARTTSNSMPSSSPNKSHWRITKKHQQLHKLVFEEGGLPDGAEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECASLLSIPRGNWYCKFCQNMFQRERFVAHNVNAVAAGRVEGVDPIEQITKRCVRIVEDVDTELNGCALCRACDFSKSGFGPRTIIICDQCDKEFHVGCLRDHKMSFLKELPEGDWFCCHDCSTIHSTFQNLLVGGAEKLPEPLLDVIKKKQEEKGLESLSDIDVKWRLLRGKIASPETRPFLLQAVSIFHECFDPIVDSITGRNLITAMIYGRTVRRQEFGAMHCAILMVNSTVVSAALLRIFGSDFAELPLVATRSVNHGKGYFQMLYSCIEKLLTSLNVKNLVLPATATAESIWIEKFGFTKMTADELSNYRKNYQQMVIFQGTSMLHKMIAPCPDIKNSS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2949 942 ProSiteProfiles Zinc finger PHD-type profile. 574 619 IPR019787 -
Prci3g2949 942 PANTHER AUTOIMMUNE REGULATOR 123 931 - -
Prci3g2949 942 ProSiteProfiles Zinc finger PHD-type profile. 665 723 IPR019787 -
Prci3g2949 942 MobiDBLite consensus disorder prediction 175 199 - -
Prci3g2949 942 Pfam PHD-finger 577 618 IPR019787 -
Prci3g2949 942 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 820 906 IPR016181 -
Prci3g2949 942 SMART PHD_3 576 617 IPR001965 -
Prci3g2949 942 SMART PHD_3 667 721 IPR001965 -
Prci3g2949 942 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 563 640 - -
Prci3g2949 942 MobiDBLite consensus disorder prediction 452 471 - -
Prci3g2949 942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 723 IPR013083 -
Prci3g2949 942 MobiDBLite consensus disorder prediction 374 423 - -
Prci3g2949 942 MobiDBLite consensus disorder prediction 126 146 - -
Prci3g2949 942 Gene3D - 772 932 - -
Prci3g2949 942 MobiDBLite consensus disorder prediction 174 206 - -
Prci3g2949 942 SUPERFAMILY FYVE/PHD zinc finger 657 720 IPR011011 -
Prci3g2949 942 MobiDBLite consensus disorder prediction 450 472 - -
Prci3g2949 942 MobiDBLite consensus disorder prediction 404 419 - -
Prci3g2949 942 Pfam Tify domain binding domain 510 560 IPR032308 -
Prci3g2949 942 Pfam Tify domain binding domain 260 315 IPR032308 -
Prci3g2949 942 SUPERFAMILY FYVE/PHD zinc finger 563 621 IPR011011 -
Prci3g2949 942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 651 IPR013083 -
Prci3g2949 942 ProSitePatterns Zinc finger PHD-type signature. 577 616 IPR019786 -
Prci3g2949 942 CDD PHD1_AIRE 576 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2949 Prci-Chr3 41107970 41115400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2949 174 932 PHD Transcription Factor Family AT2G36720 50.628 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2949 - - pcin:129313599 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2866 1 47381301 47393848 Prci3g2949 3 41107970 41115400 CCT
Prci3g2949 3 41107970 41115400 Prci3g2949 3 41107970 41115400 ECH