Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2936 ATGGCGGTTCCTCTAACGGTTGCCGCCGCACGGGCTTCACTTTACGTCGGCGACCTCCACCCTGACGTCAGCGATGGACAGCTGCTCGAATTGTTCTTGGAGTTCAAGAGCCTCACTTCTGTTCGGATCTGTAGGGACTCCTCCACCGGCAGGTCTCTATGTTATGGCTATGTCAACTTCAACTCTCCTCAAGATGCTATTCGTGCTATTGAGGTGAAGAATCATTTTAAACTGAACGGGAAAATGATAAGGGTCATGTGGACCCATCGTGACCCCGAAGCAAGAAAAAGCGGCAAAGCGAACGTATTTGTTAAGAACTTAGCTGAACCTATAGATAATGCGGGATTACACGAACTGTTTCAAAAATTCGGGAAAATCTTGTCCACCAAAGTTGTCACGTCTGAATATGGGAAGAGCAAGGGGTATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGTCGCCATTGAAAAGCTGAATGGCTCCACTGTTAGAGATAAACTGATATATGTTGGTAAGTTTGTCAAAAAAAGTGAACGTCTCTTGCCCGGTCCCGATTCCAAGTTCACGAATTTGTTTATGAAAAATCTGGACCCAGAGACCACAGAAGAGCTTCTGCAGGAAAAGTTCGCCCCTTTTGGAAACATTGTTAATTTGGCTGTTGCTAAGGACAACAATGGAGTATCAAAGGGTTTCGGCTTTGTGAACTATGATAATCCAGATGATGCTAAACGGGCAATGGAAACCATGAATGGATCACGACTAGGTTCGAAGATTATATATGTAGCCAGAGCGCAAAAGAAGGCTGAGCGTGAAAAGATCTTGCACCATCAGTTTGAGGAGAAGCGTAGGCAACGGATCTTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGATGATGATGTCAATGACGAAGAACTAAGACATCATTTTAGTTCATGCGGGACAATAACGTCTGCTAAAGTTATGCGGGACGACAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCGCTCCTGAGGAGGCCAATAGAGCTGTAAACATTTTCCATGGATGCATGTTTCATCGTAAACTGCTATATGTTGCCATAGCTCAAAGGAAGGAAGACAGGCAAGCACAATTAAAGGTGCAGTATGCACCGGGAATAGCAGGACTAGCTGGACCTCCAACCGCTGTTATACCTGGTGGATATCCTCCTTACTACTACGAAGCCACTGGTGTTGTTTCACAGCTGCCATATCGACCCGGGCTAGTTTATCAACCGCTGGGATTGAGGCCAGGATGGAGGCCTAACGGCTTTGCACCTCCAACAAGACCAGCTCAACAGGCTCCATTTTCTGTTCCTGCTACTTCTATGAGGCCGCACAGACAAAACAGGAGTAGGATGAATGGGCAGGCAATTTCGCAGGGGAATGTTCGCTTGGGTAAATTCATGCCACAAGCACAACACCCTTCGCAGCCAATGGTCTCTTCAAAAGAATCAACTACTCGGCAGGTTCGCTTTGCTTTTGCTGCTCAGGAGTGGCAGCAGCAAAAGCAACTCCTTGGCGAGCATATTTACCGACGGGTACATAAACTCAAGCCTAGCCTGGCAGCGAAGATTACTGGGATGCTCCTGGAAATGGAAATTGGTGAATTGCTGCTTCTCCTGGAATCTCCAAGATCTCTTTTTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTAAGAACTCCAAGACTTGA 1734 0.4614 MAVPLTVAAARASLYVGDLHPDVSDGQLLELFLEFKSLTSVRICRDSSTGRSLCYGYVNFNSPQDAIRAIEVKNHFKLNGKMIRVMWTHRDPEARKSGKANVFVKNLAEPIDNAGLHELFQKFGKILSTKVVTSEYGKSKGYGFVQFESEDSANVAIEKLNGSTVRDKLIYVGKFVKKSERLLPGPDSKFTNLFMKNLDPETTEELLQEKFAPFGNIVNLAVAKDNNGVSKGFGFVNYDNPDDAKRAMETMNGSRLGSKIIYVARAQKKAEREKILHHQFEEKRRQRILKYKGSNIYVKNIDDDVNDEELRHHFSSCGTITSAKVMRDDKGISKGFGFVCFSAPEEANRAVNIFHGCMFHRKLLYVAIAQRKEDRQAQLKVQYAPGIAGLAGPPTAVIPGGYPPYYYEATGVVSQLPYRPGLVYQPLGLRPGWRPNGFAPPTRPAQQAPFSVPATSMRPHRQNRSRMNGQAISQGNVRLGKFMPQAQHPSQPMVSSKESTTRQVRFAFAAQEWQQQKQLLGEHIYRRVHKLKPSLAAKITGMLLEMEIGELLLLLESPRSLFAKVEEAVQVLKNSKT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2936 577 FunFam Polyadenylate-binding protein 182 276 - -
Prci3g2936 577 SMART poly_2 512 575 IPR002004 GO:0003723
Prci3g2936 577 PANTHER RNA BINDING PROTEIN 11 81 - -
Prci3g2936 577 FunFam Polyadenylate-binding protein 4 99 - -
Prci3g2936 577 FunFam Polyadenylate-binding protein 277 385 - -
Prci3g2936 577 Coils Coil 263 283 - -
Prci3g2936 577 CDD RRM4_I_PABPs 293 371 - -
Prci3g2936 577 Gene3D - 278 382 IPR012677 -
Prci3g2936 577 Gene3D - 497 577 - -
Prci3g2936 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Prci3g2936 577 SUPERFAMILY PABC (PABP) domain 460 575 IPR036053 GO:0003723
Prci3g2936 577 SMART rrm1_1 101 173 IPR000504 GO:0003723
Prci3g2936 577 SMART rrm1_1 295 367 IPR000504 GO:0003723
Prci3g2936 577 SMART rrm1_1 13 86 IPR000504 GO:0003723
Prci3g2936 577 SMART rrm1_1 192 264 IPR000504 GO:0003723
Prci3g2936 577 FunFam Polyadenylate-binding protein 101 181 - -
Prci3g2936 577 Gene3D - 98 179 IPR012677 -
Prci3g2936 577 Gene3D - 6 97 IPR012677 -
Prci3g2936 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Prci3g2936 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Prci3g2936 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 362 IPR000504 GO:0003723
Prci3g2936 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Prci3g2936 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Prci3g2936 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Prci3g2936 577 Gene3D - 180 277 IPR012677 -
Prci3g2936 577 Pfam Poly-adenylate binding protein, unique domain 508 572 IPR002004 GO:0003723
Prci3g2936 577 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 500 577 IPR002004 GO:0003723
Prci3g2936 577 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 384 IPR006515 GO:0003723
Prci3g2936 577 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Prci3g2936 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Prci3g2936 577 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2936 Prci-Chr3 40995524 40999860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2936 12 577 Eukaryotic Initiation Factors Gene Family AT2G36660 52.487 0.0 566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2884 1 47565063 47570404 Prci3g2936 3 40995524 40999860 CCT
Prci3g2936 3 40995524 40999860 Prci3g2936 3 40995524 40999860 ECH