Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2935 ATGGCGGTTCCTCTAACGGTTGCCGCCGCACGGGCTTCACTTTACGTCGGCGACCTCCACCCTGACGTCAGCGATGGACAGCTGCTCGAATTGTTCTTGGAGTTCAAGAGCCTCACTTCTGTTCGGATCTGTAGGGACTCCTCCACCGGCAGGTCTCTATGTTATGGCTATGTCAACTTCAACTCTCCTCAAGATGCTATTCGTGCTATTGAGGTGAAGAATCATTTTAAACTGAACGGGAAAATGATAAGGGTCATGTGGACCCATCGTGACCCCGAAGCAAGAAAAAGCGGCAAAGCGAACGTATTTGTTAAGAACTTAGCTGAACCTATAGATAATGCGGGATTACACGAACTGTTTCAAAAATTCGGGAAAATCTTGTCCACCAAAGTTGTCACGTCTGAATATGGGAAGAGCAAGGGGTATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGTCGCCATTGAAAAGCTGAATGGCTCCACTGTTAGAGATAAACTGATATATGTTGGTAAGTTTGTCAAAAAAAGTGAACGTCTCTTGCCCGGTCCCGATTCCAAGTTCACGAATTTGTTTATGAAAAATCTGGACCCAGAGACCACAGAAGAGCTTCTGCAGGAAAAGTTCGCCCCTTTTGGAAACATTGTTAATTTGGCTGTTGCTAAGGACAACAATGGAGTATCAAAGGGTTTCGGCTTTGTGAACTATGATAATCCAGATGATGCTAAACGGGCAATGGAAACCATGAATGGATCACGACTAGGTTCGAAGATTATATATGTAGCCAGAGCGCAAAAGAAGGCTGAGCGTGAAAAGATCTTGCACCATCAGTTTGAGGAGAAGCGTAGGCAACGGATCTTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGATGATGATGTCAATGACGAAGAACTAAGACATCATTTTAGTTCATGCGGGACAATAACGTCTGCTAAAGTTATGCGGGACGACAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCGCTCCTGAGGAGGCCAATAGAGCTGTAAACATTTTCCATGGATGCATGTTTCATCGTAAACTGCTATATGTTGCCATAGCTCAAAGGAAGGAAGACAGGCAAGCACAATTAAAGGTGCAGTATGCACCGGGAATAGCAGGACTAGCTGGACCTCCAACCGCTGTTATACCTGGTGGATATCCTCCTTACTACTACGAAGCCACTGGTGTTGTTTCACAGCTGCCATATCGACCCGGGCTAGTTTATCAACCGCTGGGATTGAGGCCAGGATGGAGGCCTAACGGCTTTGCACCTCCAACAAGACCAGCTCAACAGGCTCCATTTTCTGTTCCTGCTACTTCTATGAGGCCGCACAGACAAAACAGGAGTAGGATGAATGGGCAGGCAATTTCGCAGGGGAATGTTCGCTTGGGTAAATTCATGCCACAAGCACAACACCCTTCGCAGCCAATGGTCTCTTCAAAAGAATCAACTACTCGGCAGGTTCGCTTTGCTTTTGCTGCTCAGGAGTGGCAGCAGCAAAAGCAACTCCTTGGCGAGCATATTTACCGACGGGTACATAAACTCAAGCCTGGCAGCGAAGATTACTGGGATGCTCCTGGAAATGGAAATTGGTGA 1644 0.4611 MAVPLTVAAARASLYVGDLHPDVSDGQLLELFLEFKSLTSVRICRDSSTGRSLCYGYVNFNSPQDAIRAIEVKNHFKLNGKMIRVMWTHRDPEARKSGKANVFVKNLAEPIDNAGLHELFQKFGKILSTKVVTSEYGKSKGYGFVQFESEDSANVAIEKLNGSTVRDKLIYVGKFVKKSERLLPGPDSKFTNLFMKNLDPETTEELLQEKFAPFGNIVNLAVAKDNNGVSKGFGFVNYDNPDDAKRAMETMNGSRLGSKIIYVARAQKKAEREKILHHQFEEKRRQRILKYKGSNIYVKNIDDDVNDEELRHHFSSCGTITSAKVMRDDKGISKGFGFVCFSAPEEANRAVNIFHGCMFHRKLLYVAIAQRKEDRQAQLKVQYAPGIAGLAGPPTAVIPGGYPPYYYEATGVVSQLPYRPGLVYQPLGLRPGWRPNGFAPPTRPAQQAPFSVPATSMRPHRQNRSRMNGQAISQGNVRLGKFMPQAQHPSQPMVSSKESTTRQVRFAFAAQEWQQQKQLLGEHIYRRVHKLKPGSEDYWDAPGNGNW 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2935 547 FunFam Polyadenylate-binding protein 182 276 - -
Prci3g2935 547 Coils Coil 263 283 - -
Prci3g2935 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Prci3g2935 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Prci3g2935 547 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
Prci3g2935 547 CDD RRM4_I_PABPs 293 371 - -
Prci3g2935 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 362 IPR000504 GO:0003723
Prci3g2935 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Prci3g2935 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Prci3g2935 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Prci3g2935 547 Gene3D - 180 277 IPR012677 -
Prci3g2935 547 Gene3D - 278 382 IPR012677 -
Prci3g2935 547 Gene3D - 98 179 IPR012677 -
Prci3g2935 547 FunFam Polyadenylate-binding protein 101 181 - -
Prci3g2935 547 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Prci3g2935 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Prci3g2935 547 FunFam Polyadenylate-binding protein 277 385 - -
Prci3g2935 547 FunFam Polyadenylate-binding protein 4 99 - -
Prci3g2935 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Prci3g2935 547 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 384 IPR006515 GO:0003723
Prci3g2935 547 Gene3D - 6 97 IPR012677 -
Prci3g2935 547 PANTHER RNA BINDING PROTEIN 11 89 - -
Prci3g2935 547 SMART rrm1_1 101 173 IPR000504 GO:0003723
Prci3g2935 547 SMART rrm1_1 295 367 IPR000504 GO:0003723
Prci3g2935 547 SMART rrm1_1 13 86 IPR000504 GO:0003723
Prci3g2935 547 SMART rrm1_1 192 264 IPR000504 GO:0003723
Prci3g2935 547 SUPERFAMILY RNA-binding domain, RBD 290 383 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2935 Prci-Chr3 40995524 40999860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2935 12 533 Eukaryotic Initiation Factors Gene Family AT2G36660 51.391 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2935 K13126 - gmx:100779547 759.985