Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2925 ATGGAATGGAATGGAAGCATGAGACCCTTTGTTCCTCGAGCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCAGCCCATATCCAGGAATGGAAGTGAAACACGGAGCAGCAGCACAAGGGTTGGTTCCGGATATGGAGAAAATAAAGTACGGAAACCAGATGGAGAAGAAGAAGCGACTAACGAGCGAGCAGCTTGAGTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGACCCTGATAGGAAGATGAAGCTCTCGAGGGAGCTAGGGCTGCAGCCTCGCCAAATCGCTGTATGGTTTCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTCGAGAACTTGTATGATGCCCTCAAACAAGAATTTGATGCTATATCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCGTCAAAGACACAAGTTTCTGCAGGTTATACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCCGAGGCAGCGCTGCGTAGCTCTAACACGCAGCCACGGGGAGCAACGAGCCATCATCAGCAGAATATTGCAGAGGCCAATTATTCTTTCACTGTAGAGGATTATAGCAACGTTTCACTGCCCTACTGGGCCACTCTTGTGCCTCATTATCCTTAA 672 0.4777 MEWNGSMRPFVPRAESSLSFLYNYNCSPYPGMEVKHGAAAQGLVPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRSSNTQPRGATSHHQQNIAEANYSFTVEDYSNVSLPYWATLVPHYP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2925 223 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Prci3g2925 223 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Prci3g2925 223 Coils Coil 53 73 - -
Prci3g2925 223 Gene3D - 51 121 - -
Prci3g2925 223 SMART HOX_1 56 117 IPR001356 GO:0003677
Prci3g2925 223 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Prci3g2925 223 Coils Coil 105 153 - -
Prci3g2925 223 CDD homeodomain 58 114 IPR001356 GO:0003677
Prci3g2925 223 MobiDBLite consensus disorder prediction 158 193 - -
Prci3g2925 223 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
Prci3g2925 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 190 IPR045224 GO:0003700
Prci3g2925 223 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Prci3g2925 223 FunFam Putative homeobox-leucine zipper protein ATHB-51 55 118 - -
Prci3g2925 223 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Prci3g2925 223 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2925 Prci-Chr3 40899754 40901566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2925 16 143 Homeobox Transcription Factor Family AT5G03790 62.319 2.20e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci3g2925 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2925 - - rcu:8274879 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2925 3 40899754 40901566 Prci1g2895 1 47638801 47640350 CCT
Prci3g2925 3 40899754 40901566 Prci3g2925 3 40899754 40901566 ECH