Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2907 ATGCTTAGTAGTAGCAGAAGCAAATCTTCCACCGGTCGCCACCCTGTTTACAAGGGAGTGAGGCGTCGGAGCAGCGGCAAATGGGTGTCTGAAATCCGGGAGCCCAAGAAGCCCAACAGGATTTGGCTGGGCACATTCCCTACCCCTGAAATGGCCGCCGTCGCCTACGACGTCGCTGCCCTTGCTCTCAAGGGCAAGCATGCCGAGCTCAACTTCCCCGACTCCGCTTCTTCCTTGCCCGTGCCGGCGTCTACCTCTCCCTCTGATATTCAGGTGGCTGCAGCCAGCGCCGCAGCCGCCGCCGGGGCTGCTAAAGATGCTTTGTCTGCGGCCACTGGGGAGTCTTCTGCTTCAGTGTCACTGAAAGACAGCGAAACGGGAGCGGCGGAGGAGTTTGTGGATGAGGATTTGATCTTTGATATGCCAAATGTGCTGCTCAATATGGCAGAAGGACTGATGCTCTCTCCTCCTCCGCTGGATTGGGATGCTGCTGCTCCCCAAGATTACATGTCTCAGGATCCACACCTTTGGAACTTCCGTCCCTAA 546 0.5714 MLSSSRSKSSTGRHPVYKGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKHAELNFPDSASSLPVPASTSPSDIQVAAASAAAAAGAAKDALSAATGESSASVSLKDSETGAAEEFVDEDLIFDMPNVLLNMAEGLMLSPPPLDWDAAAPQDYMSQDPHLWNFRP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2907 181 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Prci3g2907 181 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Prci3g2907 181 MobiDBLite consensus disorder prediction 1 31 - -
Prci3g2907 181 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Prci3g2907 181 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Prci3g2907 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 178 IPR045277 GO:0003700
Prci3g2907 181 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Prci3g2907 181 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Prci3g2907 181 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Prci3g2907 181 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Prci3g2907 181 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2907 Prci-Chr3 40743174 40744636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2907 7 179 AP2-EREBP Transcription Factor Family AT2G36450 64.246 1.57e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci3g2907 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2907 - - gmx:100799620 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2928 1 47968120 47969002 Prci3g2907 3 40743174 40744636 CCT
Prci3g2907 3 40743174 40744636 Prci3g2907 3 40743174 40744636 ECH