Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2858 ATGCCAGGGATGAGAGGCAGTGATGTTGAAGACCAAAATCCAGAGTCACGAGAGAAGCAGGGTGACCTTGAAAAGCCTACAGATTCTGAAGAGAAGGTAGACTTTGATGGGGAAAATGATGAAGGGGATACCATGGAGGAAGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAGGAGCAGGAGGAAGTGGAAGGGGAAGAGGAGGATGAGGATGGGGTGGAGGAAGAGACTGAAGGAGCTGGCAATAGAAATGTTGCGGACATTGAGGATGAACATGAGAAAAGGAAGCTAGCAGACCTTCTTGAACTTCCACCTCATGGATCAGCGGTTTACCTTGGTGGCATTCCTCACAATGCTTCTGAAGAGGATTTGAGGGACTTCTGTCAATCTGTGGGAGATGTATTTGAGGTTAGGATTATAAGGGGAAAAGAATCTGGTGAAACGAAAGTTTATGCTTTTGTGACCTTCAAGACGAAGGAGATGGCTTCTAAGGCTATTGAGAAGCTGAACAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAACGTAGGTTGTTTATTGGTAATATTCCTAGACATTGGACGGAGCAAGATTTGAGGAAGGCTGTTACAGAAATTGGGCCTGGTGTCAATTCTGTTGCTCTGTTGAAGGAAACAAAGAATTCAGATCGTAATCGCGGGTTTGCTTTTATTGAGTATTACAATCATGCATGTGCAGAATATTCATGGCAGAAGATGTCCAACCCAAAATTTAAACTTGACGACAATGCTCCGACAGTAAAGTGGGCTGAACCTAAGAATGCTGAATCATCTGCAGCCTCCCAGGTAAAGGCAGTGTATGTAAAGAATCTGCCAGAAAACATTACTCAGGATCGCCTTAAGGAGTTGTTTGAGCATCATGGAAAGATAACAAAAGTGGTACTCCCTCCTGCTAAAGCTGGACATGAAAGGAGCAGATTTGGTTTTGTTTACTTTGCTGAGAGGTCATCTGCCAAGAAGTCGTTGGAGGATGCCGAGAAGTATGAAATTGACGGCCAAGTTTTGGAGTGTTCGTTTGCAAAACCACAAGCAGATCAGAAGTCGTCTAGGACACCAGTTTCACAGAACTCAATTGTACTTCCAACTTATCCACCACAACTTGGCTATGGTTTATTTGGAGGTGCCTATGGTGCTTCGGGTTCAGGATGTGGTGCGGCTAGCTTTACACAATGCCCTTTTGATTGGCCCCGTTTGTTTGGCTCTGTATTACTGTTGCTGAGATAG 1281 0.4395 MPGMRGSDVEDQNPESREKQGDLEKPTDSEEKVDFDGENDEGDTMEEEVEYEEVEEEEEEQEEVEGEEEDEDGVEEETEGAGNRNVADIEDEHEKRKLADLLELPPHGSAVYLGGIPHNASEEDLRDFCQSVGDVFEVRIIRGKESGETKVYAFVTFKTKEMASKAIEKLNKSKFQGNEIKCSASKEKRRLFIGNIPRHWTEQDLRKAVTEIGPGVNSVALLKETKNSDRNRGFAFIEYYNHACAEYSWQKMSNPKFKLDDNAPTVKWAEPKNAESSAASQVKAVYVKNLPENITQDRLKELFEHHGKITKVVLPPAKAGHERSRFGFVYFAERSSAKKSLEDAEKYEIDGQVLECSFAKPQADQKSSRTPVSQNSIVLPTYPPQLGYGLFGGAYGASGSGCGAASFTQCPFDWPRLFGSVLLLLR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2858 426 CDD RRM_SF 111 183 - -
Prci3g2858 426 Gene3D - 189 270 IPR012677 -
Prci3g2858 426 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Prci3g2858 426 SUPERFAMILY RNA-binding domain, RBD 280 369 IPR035979 GO:0003676
Prci3g2858 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Prci3g2858 426 MobiDBLite consensus disorder prediction 10 32 - -
Prci3g2858 426 SMART rrm1_1 190 267 IPR000504 GO:0003723
Prci3g2858 426 SMART rrm1_1 284 357 IPR000504 GO:0003723
Prci3g2858 426 SMART rrm1_1 110 183 IPR000504 GO:0003723
Prci3g2858 426 SMART rrm2_1 284 357 IPR003954 GO:0003676
Prci3g2858 426 SMART rrm2_1 110 183 IPR003954 GO:0003676
Prci3g2858 426 Gene3D - 5 188 IPR012677 -
Prci3g2858 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 257 IPR000504 GO:0003723
Prci3g2858 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Prci3g2858 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Prci3g2858 426 Gene3D - 271 377 IPR012677 -
Prci3g2858 426 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 368 - -
Prci3g2858 426 Coils Coil 44 77 - -
Prci3g2858 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Prci3g2858 426 MobiDBLite consensus disorder prediction 1 85 - -
Prci3g2858 426 SUPERFAMILY RNA-binding domain, RBD 107 274 IPR035979 GO:0003676
Prci3g2858 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Prci3g2858 426 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2858 Prci-Chr3 40372447 40375996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2858 111 384 Eukaryotic Initiation Factors Gene Family AT4G34110 25.962 7.92e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2858 K13161 - qsa:O6P43_005954 475.322