Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2856 ATGCCAGGGATGAGAGGCAGTGATGTTGAAGACCAAAATCCAGAGTCACGAGAGAAGCAGGGTGACCTTGAAAAGCCTACAGATTCTGAAGAGAAGGTAGACTTTGATGGGGAAAATGATGAAGGGGATACCATGGAGGAAGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAGGAGCAGGAGGAAGTGGAAGGGGAAGAGGAGGATGAGGATGGGGTGGAGGAAGAGACTGAAGGAGCTGGCAATAGAAATGTTGCGGACATTGAGGATGAACATGAGAAAAGGAAGCTAGCAGACCTTCTTGAACTTCCACCTCATGGATCAGCGGTTTACCTTGGTGGCATTCCTCACAATGCTTCTGAAGAGGATTTGAGGGACTTCTGTCAATCTGTGGGAGATGTATTTGAGGTTAGGATTATAAGGGGAAAAGAATCTGGTGAAACGAAAGTTTATGCTTTTGTGACCTTCAAGACGAAGGAGATGGCTTCTAAGGCTATTGAGAAGCTGAACAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAACGTAGGTTGTTTATTGGTAATATTCCTAGACATTGGACGGAGCAAGATTTGAGGAAGGCTGTTACAGAAATTGGGCCTGGTGTCAATTCTGTTGCTCTGTTGAAGGAAACAAAGAATTCAGATCGTAATCGCGGGTTTGCTTTTATTGAGTATTACAATCATGCATGTGCAGAATATTCATGGCAGAAGATGTCCAACCCAAAATTTAAACTTGACGACAATGCTCCGACAGTAAAGTGGGCTGAACCTAAGAATGCTGAATCATCTGCAGCCTCCCAGGTAAAGGCAGTGTATGTAAAGAATCTGCCAGAAAACATTACTCAGGATCGCCTTAAGGAGTTGTTTGAGCATCATGGAAAGATAACAAAAGTGGTACTCCCTCCTGCTAAAGCTGGACATGAAAGGAGCAGATTTGGTTTTGTTTACTTTGCTGAGAGGTCATCTGCCAAGAAGTCGTTGGAGGATGCCGAGAAGTATGAAATTGACGGCCAAGTTTTGGAGTGTTCGTTTGCAAAACCACAAGCAGATCAGAAGTCGTCTAGGACACCAGTTTCACAGAACTCAATTGTACTTCCAACTTATCCACCACAACTTGGCTATGGTTTATTTGGAGGTGCCTATGGTGCTTCGGGTTCAGGATGTGGTGCGGCTAGCTTTACACAACCGTTGGTGTATGGTAGGGGAGCGGCTTCTGCTGGTATCGCAATGATGCCTATGCTCTTACCTGATGGAAGGATTGGATATGTATTGCAACAGTCAGGATTGCAACAGCATTCTGGTGCATCGCCATCCCGTGGTGGCAGGAGAGGTGGCAGCTCCAGTGGTGGGAGACGCGGTGATGATAAGAATTGGAGCCGATATCATCCCTACTAA 1437 0.4509 MPGMRGSDVEDQNPESREKQGDLEKPTDSEEKVDFDGENDEGDTMEEEVEYEEVEEEEEEQEEVEGEEEDEDGVEEETEGAGNRNVADIEDEHEKRKLADLLELPPHGSAVYLGGIPHNASEEDLRDFCQSVGDVFEVRIIRGKESGETKVYAFVTFKTKEMASKAIEKLNKSKFQGNEIKCSASKEKRRLFIGNIPRHWTEQDLRKAVTEIGPGVNSVALLKETKNSDRNRGFAFIEYYNHACAEYSWQKMSNPKFKLDDNAPTVKWAEPKNAESSAASQVKAVYVKNLPENITQDRLKELFEHHGKITKVVLPPAKAGHERSRFGFVYFAERSSAKKSLEDAEKYEIDGQVLECSFAKPQADQKSSRTPVSQNSIVLPTYPPQLGYGLFGGAYGASGSGCGAASFTQPLVYGRGAASAGIAMMPMLLPDGRIGYVLQQSGLQQHSGASPSRGGRRGGSSSGGRRGDDKNWSRYHPY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2856 478 CDD RRM_SF 111 183 - -
Prci3g2856 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Prci3g2856 478 MobiDBLite consensus disorder prediction 10 32 - -
Prci3g2856 478 MobiDBLite consensus disorder prediction 440 457 - -
Prci3g2856 478 SUPERFAMILY RNA-binding domain, RBD 278 369 IPR035979 GO:0003676
Prci3g2856 478 SMART rrm1_1 190 267 IPR000504 GO:0003723
Prci3g2856 478 SMART rrm1_1 284 357 IPR000504 GO:0003723
Prci3g2856 478 SMART rrm1_1 110 183 IPR000504 GO:0003723
Prci3g2856 478 SMART rrm2_1 284 357 IPR003954 GO:0003676
Prci3g2856 478 SMART rrm2_1 110 183 IPR003954 GO:0003676
Prci3g2856 478 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Prci3g2856 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 436 - -
Prci3g2856 478 Coils Coil 44 77 - -
Prci3g2856 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Prci3g2856 478 MobiDBLite consensus disorder prediction 1 85 - -
Prci3g2856 478 SUPERFAMILY RNA-binding domain, RBD 107 274 IPR035979 GO:0003676
Prci3g2856 478 Gene3D - 272 378 IPR012677 -
Prci3g2856 478 Gene3D - 189 270 IPR012677 -
Prci3g2856 478 MobiDBLite consensus disorder prediction 440 478 - -
Prci3g2856 478 MobiDBLite consensus disorder prediction 462 478 - -
Prci3g2856 478 Gene3D - 5 188 IPR012677 -
Prci3g2856 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Prci3g2856 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Prci3g2856 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Prci3g2856 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 257 IPR000504 GO:0003723
Prci3g2856 478 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2856 Prci-Chr3 40372087 40376549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2856 111 384 Eukaryotic Initiation Factors Gene Family AT4G34110 25.321 5.69e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2856 K13161 - cit:102619718 545.043