Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2832 ATGTCCGTAAATCACTACTGGTCGGACATTCCAGAGGCCACGCTGTGGTGGGCTGAGCAACATCACCATCATCAAGGCTTCCTTATGCAACCCCTCCAAAACCCCTCTCCTTCTGCCTGGCCTTCCTACCTCTACCGTCCCCCGCCCCCGACCCGCTTCAACCTCAACCAGGATGACGACGAAGGCGAAGACGACGACAGTATTCAACACCAACGGACTGGTCACGTGGAAAACGATACGCCGCCCGCGTCGCAAGGGCGGTCGGGCGAGGACGAAAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGATTCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTCGGGCCGGGAGGGGAGGCCGGAGAGAGCAAGGGGGTGTCGCTGAGTTTCGAGGACGAGGCGGGCAAGTGCTGGAGGTTCCGTTACTCGTACTGGAACAGCAGCCAGAGCTACGTCCTGACTAAAGGATGGAGTCGTTACGTCAAGGACAAGCGTCTCGATGCTGGCGACGTTGTTTTCTTCCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCACCAGTCTCTGTCCACCCCCGCGCACGTTAGCAGAGCGTTACTGCTTCACAATACCTCTACCACGACCGCCACTGACGCCCATAGCAATATCAATATCAATAACGATGTTGGCGTGGGTGTGGAGTGGACCAGAAGTTTCTATGCTGCACATCCTTACCCTACGCATCATCATCATCAACCCTTCCCATACCAACCTGACTGTTTTCATGCAGGTGGGGGGTTGGAAGCAGAGCGAAGCAAAACGACGTCGCCGGCGGAGAACAACTCCAGCTCGAAGACACTGAGGCTGTTCGGTGTAAACATGGAATGCCAACCCGACGAATCAGGATCATCCGGACCCGAATTTTCGTACATGTCATCAACGTCGTCGTCCCAGGGTACAGCCGTCCAACACCACCACATCTACGGCCATTATAATCATCAATCTGCTTATTATTCCAATCACATGGTACGTCAACAGCCTGGCTCCTAG 1080 0.5639 MSVNHYWSDIPEATLWWAEQHHHHQGFLMQPLQNPSPSAWPSYLYRPPPPTRFNLNQDDDEGEDDDSIQHQRTGHVENDTPPASQGRSGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGPGGEAGESKGVSLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWRRRHQSLSTPAHVSRALLLHNTSTTTATDAHSNININNDVGVGVEWTRSFYAAHPYPTHHHHQPFPYQPDCFHAGGGLEAERSKTTSPAENNSSSKTLRLFGVNMECQPDESGSSGPEFSYMSSTSSSQGTAVQHHHIYGHYNHQSAYYSNHMVRQQPGS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2832 359 MobiDBLite consensus disorder prediction 39 102 - -
Prci3g2832 359 MobiDBLite consensus disorder prediction 307 326 - -
Prci3g2832 359 ProSiteProfiles B3 DNA-binding domain profile. 97 203 IPR003340 GO:0003677
Prci3g2832 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 320 IPR044800 GO:0003700
Prci3g2832 359 MobiDBLite consensus disorder prediction 283 300 - -
Prci3g2832 359 SMART B3_2 97 203 IPR003340 GO:0003677
Prci3g2832 359 SUPERFAMILY DNA-binding pseudobarrel domain 96 204 IPR015300 -
Prci3g2832 359 Gene3D - 91 211 IPR015300 -
Prci3g2832 359 Pfam B3 DNA binding domain 97 202 IPR003340 GO:0003677
Prci3g2832 359 CDD B3_DNA 96 193 IPR003340 GO:0003677
Prci3g2832 359 MobiDBLite consensus disorder prediction 275 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2832 Prci-Chr3 40242285 40244363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2832 90 310 RAV Transcription Factor Family AT5G06250 50.655 3.19e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g2832 B3 1.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2832 K09287 - gmx:100795470 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2997 1 48635544 48637417 Prci3g2832 3 40242285 40244363 CCT
Prci3g2832 3 40242285 40244363 Prci3g2832 3 40242285 40244363 ECH