Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2804 ATGAAGCGGAAGAGCATAGTGAATGACAGCAATGGAGAGTCCCAGGGATGGAGTAACAGCCCAGCTGCTAATGTAACAAGTAGTCCCCTTAAAACACCTGTGTCTGCAAAAGGTGGAAGGGCATACAGTAAGTCCAAGGTTGCCAAGGAAGGCAAATCTGGTCCTCAGACCCCCATCTCAAATGCTGGTTCCCCTTCTCTAACTCCTGCTGGCAGCTGCCGTTATGACAGTTCCTTGGGTTTATTGACTAAGAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTGATCTTGACCTAAACAAAGCAGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAGAATAGGATACATTGGAAGGGAATCAAATCTTCTACATCTGGAGAGGTTGATGGTGATGTATCTATGCTGAAGGCAGATGTTGAGAAGCTTTCTTTGGAAGAGCAAAGATTAGATGATCAAATAAGGGAAATGCAGGAAAGGCTGAGAAATCTGAGCGAAGATGAAAAAAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATCAAGGGCCTACCCAGCTTACAGAATGAAACTCTAATAGCAATTAAAGCGCCACATGGGACCACTTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGCACAATGGGTCCTATTGATGTCTACCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAATGGCGTCGAGCCCCCTGCAAGCCTCCCACTTGCTTCAAGTTCAGGGTCAAATGAACACCTAACGACAGAAATGACTCCTCTTGAACATAATGGGAAGGGTCTTGAATCTCAAACTCAACTGTCTTCTCATACATGCTCTGATCTAAATGCTTCACCAGAGTTCGGCGGGGGCATTATGAAAATTGTTCCTTCTGATGTTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGATTCAAGTGTTGATTGGAATGGGGTGGACATGCTTTCCTCTGAGTTTGGAATCATCTCAAGGCCACAAACTCCATCATCTGGGTTTGCTGATGGACCATCGTCATTAGCTAACTCTACTCAGAGGTGA 1188 0.4369 MKRKSIVNDSNGESQGWSNSPAANVTSSPLKTPVSAKGGRAYSKSKVAKEGKSGPQTPISNAGSPSLTPAGSCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSTSGEVDGDVSMLKADVEKLSLEEQRLDDQIREMQERLRNLSEDEKNQKWLFVTEEDIKGLPSLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPASLPLASSSGSNEHLTTEMTPLEHNGKGLESQTQLSSHTCSDLNASPEFGGGIMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLSSEFGIISRPQTPSSGFADGPSSLANSTQR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2804 395 Gene3D - 146 256 - -
Prci3g2804 395 MobiDBLite consensus disorder prediction 8 33 - -
Prci3g2804 395 MobiDBLite consensus disorder prediction 54 70 - -
Prci3g2804 395 FunFam E2F transcription factor 1 68 141 - -
Prci3g2804 395 Pfam E2F/DP family winged-helix DNA-binding domain 76 139 IPR003316 GO:0005667|GO:0006355
Prci3g2804 395 PANTHER TRANSCRIPTION FACTOR E2F 18 357 IPR015633 GO:0000978|GO:0006357
Prci3g2804 395 Pfam E2F transcription factor CC-MB domain 155 255 IPR032198 GO:0046983
Prci3g2804 395 SUPERFAMILY E2F-DP heterodimerization region 152 256 IPR037241 -
Prci3g2804 395 CDD E2F_DD 155 256 IPR032198 GO:0046983
Prci3g2804 395 Gene3D - 68 141 IPR036388 -
Prci3g2804 395 MobiDBLite consensus disorder prediction 1 70 - -
Prci3g2804 395 SUPERFAMILY "Winged helix" DNA-binding domain 74 137 IPR036390 -
Prci3g2804 395 Coils Coil 152 193 - -
Prci3g2804 395 SMART E2F_TDP_2 74 139 IPR003316 GO:0005667|GO:0006355
Prci3g2804 395 MobiDBLite consensus disorder prediction 374 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2804 Prci-Chr3 40033898 40038222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2804 2 395 E2F-DP Transcription Factor Family AT2G36010 60.197 3.24e-152 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci3g2804 E2F_CC-MB 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2804 K06620 - gmx:100811762 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2804 3 40033898 40038222 Prci3g2804 3 40033898 40038222 ECH