Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2802 ATGTCTGGGGGCGTTGGAGCTTCAAACCGCCCGGCATCGCCACCACCCGAGACTTCTCAGAATCGGCCGCCACTTAAGCGTCACCTGGCCTTCGCATCGACTAAACCGCCATTTGTTCCTCCGGATGATTATCACAGCTTTTCTTCTCCCAACTCTAGAAGAGCTGCCGATCAAGAGCCTGAAGCTGTTGTTGTTCGATCTCCTTACATGAAGCGGAAGAGCATAGTGAATGACAGCAATGGAGAGTCCCAGGGATGGAGTAACAGCCCAGCTGCTAATGTAACAAGTAGTCCCCTTAAAACACCTGTGTCTGCAAAAGGTGGAAGGGCATACAGTAAGTCCAAGGTTGCCAAGGAAGGCAAATCTGGTCCTCAGACCCCCATCTCAAATGCTGGTTCCCCTTCTCTAACTCCTGCTGGCAGCTGCCGTTATGACAGTTCCTTGGGTTTATTGACTAAGAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTGATCTTGACCTAAACAAAGCAGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAGAATAGGATACATTGGAAGGGAATCAAATCTTCTACATCTGGAGAGGTTGATGGTGATGTATCTATGCTGAAGGCAGATGTTGAGAAGCTTTCTTTGGAAGAGCAAAGATTAGATGATCAAATAAGGGAAATGCAGGAAAGGCTGAGAAATCTGAGCGAAGATGAAAAAAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATCAAGGGCCTACCCAGCTTACAGAATGAAACTCTAATAGCAATTAAAGCGCCACATGGGACCACTTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGCACAATGGGTCCTATTGATGTCTACCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAATGGCGTCGAGCCCCCTGCAAGCCTCCCACTTGCTTCAAGTTCAGGGTCAAATGAACACCTAACGACAGAAATGACTCCTCTTGAACATAATGGGAAGGGTCTTGAATCTCAAACTCAACTGTCTTCTCATACATGCTCTGATCTAAATGCTTCACCAGAGTTCGGCGGGGGCATTATGAAAATTGTTCCTTCTGATGTTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGATTCAAGTGTTGATTGGAATGGGGTGGACATGCTTTCCTCTGAGTTTGGAATCATCTCAAGGCCACAAACTCCATCATCTGGGTTTGCTGATGGACCATCGTCATTAGCTAACTCTACTCAGAGGTGA 1395 0.4523 MSGGVGASNRPASPPPETSQNRPPLKRHLAFASTKPPFVPPDDYHSFSSPNSRRAADQEPEAVVVRSPYMKRKSIVNDSNGESQGWSNSPAANVTSSPLKTPVSAKGGRAYSKSKVAKEGKSGPQTPISNAGSPSLTPAGSCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSTSGEVDGDVSMLKADVEKLSLEEQRLDDQIREMQERLRNLSEDEKNQKWLFVTEEDIKGLPSLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPASLPLASSSGSNEHLTTEMTPLEHNGKGLESQTQLSSHTCSDLNASPEFGGGIMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLSSEFGIISRPQTPSSGFADGPSSLANSTQR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2802 464 MobiDBLite consensus disorder prediction 443 464 - -
Prci3g2802 464 PANTHER TRANSCRIPTION FACTOR E2F 82 426 IPR015633 GO:0000978|GO:0006357
Prci3g2802 464 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Prci3g2802 464 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Prci3g2802 464 FunFam E2F transcription factor 1 137 210 - -
Prci3g2802 464 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
Prci3g2802 464 Coils Coil 221 262 - -
Prci3g2802 464 CDD E2F_DD 224 325 IPR032198 GO:0046983
Prci3g2802 464 MobiDBLite consensus disorder prediction 1 139 - -
Prci3g2802 464 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Prci3g2802 464 MobiDBLite consensus disorder prediction 73 102 - -
Prci3g2802 464 Gene3D - 137 210 IPR036388 -
Prci3g2802 464 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Prci3g2802 464 Gene3D - 215 325 - -
Prci3g2802 464 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2802 Prci-Chr3 40033201 40038222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2802 23 464 E2F-DP Transcription Factor Family AT2G36010 59.110 5.26e-172 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci3g2802 E2F_CC-MB 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2802 K06620 - gmx:100811762 701.049