Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2782 ATGGATCACGAGATTGACGTTCCACCCTTCTTTATCTGCCCCGTTTCATTCGAAATCATGAAGGATCCCGTGACTGTGTCCACCGGTGTCACCTACGACCGTGAGAGTATTGAGAAATGGCTCTTCTCCGGCAAAAACATGACCTGCCCAGTTACTAAACAACCCCTGTCGCATGACATCGATCTCACCCCTAACCACACCCTTCGCCGATTGATTCAGGCTTGGTGCACCGTGAACGCTTCTCACGGCATCGAAAGGATTCCCACACCCAAGCCTCCAATCACCAGAACCCAGATTACCAAGCTTATCAGGGACGCTTCCCGATCACCTCAATCCCTCACTCGGTGTCTCGGAGAACTCAAATGTATCGCTTCCGACAGCGAGGCTAACAGACGCTGCATGGAAGCCTCTGGCGCTGTCGAGTTCTTAGCATCTGTTATATCCGCAGCCTCGTCCCAGGAGGAGCCTAACCAGGACGAGGCCTTAAGCATTCTCCACAGCCTCCACGTGTCCGAAGCTAGCTTAAAATCTCTCATGGCCTTCAGAAACGGCAGGTTCATTGATTCCTTAACCTCAGTCATGCAGAGGGGAGGCTTCGAGTCACGAGCCTGCGCGGTTCTTTTACTGAATTCAATGTTCCAAGTGGCTGATTCTGCACGTTTGTTCAACATAAGATATGAATTATTCGTTGAATTGGTACAAGTTCTTAAAGATCAAATCTCCCAGCAGGCTACATATGCGACGCTGCAAACACTGATCCAACTCTGCCCCTGGGGGAGAAACAGGTACAGGGCAGTAAAAGTAGGGTGTGTTTGGGAATTAATAGAACTTCTTCTGAATTGTGAGGAGAGGAAGGTGTGTGAGATGATGCTGGTGGTGTTGGATATCCTGTGTGGGTGTGCGGAGGGAAGAGCAGAGCTGCTGAGCCACGGGGCAGGGCTGGCCGTCGTGTCGAAAAAGATTCTGAGGGTTTCGACGATGGCGAACGAGAGGGCGGTGAGGATTCTGCTGTCTGTTTCAATGTTCTCGGCGACTCCGAGTGTTGTGCAGGAAATGATACAGGTGGGTGTGGTGGTGAAGCTGTGTTTGGTGATGCAAGTGGAGAGCGGAAGCAAGACGAAAGAGAAAGCTAGAGAGATTCTCAAACTGCTTGCTCATTCGTGCAATAATACTTCATGCATACCCACCAGTTTGGAAACATATAGTTTGGGAGTACAGATTATAAACAATCATTCACGGGCATCAAGCATGGCCCGTTAA 1260 0.5008 MDHEIDVPPFFICPVSFEIMKDPVTVSTGVTYDRESIEKWLFSGKNMTCPVTKQPLSHDIDLTPNHTLRRLIQAWCTVNASHGIERIPTPKPPITRTQITKLIRDASRSPQSLTRCLGELKCIASDSEANRRCMEASGAVEFLASVISAASSQEEPNQDEALSILHSLHVSEASLKSLMAFRNGRFIDSLTSVMQRGGFESRACAVLLLNSMFQVADSARLFNIRYELFVELVQVLKDQISQQATYATLQTLIQLCPWGRNRYRAVKVGCVWELIELLLNCEERKVCEMMLVVLDILCGCAEGRAELLSHGAGLAVVSKKILRVSTMANERAVRILLSVSMFSATPSVVQEMIQVGVVVKLCLVMQVESGSKTKEKAREILKLLAHSCNNTSCIPTSLETYSLGVQIINNHSRASSMAR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2782 419 SUPERFAMILY ARM repeat 100 391 IPR016024 -
Prci3g2782 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Prci3g2782 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Prci3g2782 419 CDD RING-Ubox_PUB 8 59 IPR045210 -
Prci3g2782 419 SUPERFAMILY RING/U-box 4 83 - -
Prci3g2782 419 Pfam U-box domain 7 78 IPR003613 GO:0004842|GO:0016567
Prci3g2782 419 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Prci3g2782 419 Gene3D - 94 416 IPR011989 -
Prci3g2782 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Prci3g2782 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2782 Prci-Chr3 39838509 39840303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2782 1 398 U-box Gene Family AT2G35930 54.726 7.40e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2782 - - gmx:100811258 523.087