Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2777 ATGAATGACTTGTTCTCCGGCTCCTTCTCTCGCCTCCGCCACGAGCAGGCATCGCCCGCACATCATGTCATCGAGATGGCGTCCACCACGCCTACCGGCGGTGTCAACCTCGACAAGTTTTTCGACAACGTCGAGTCCATCAAGGACGAACTCAAGGAGCTGGATCGCCTTAACCAGAACCTCCAGAGCTGTCACGAGCAGGGCAAGACCCTTCACAATGCAAAGGCCGTCAAGGACCTTCGGTCTCGCATGGACATCGATGTTTCGATTGCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAGTTGGAGGCCCTCGAGCGATCCAACGCAGCCAACCGTAGCTTGCCGGGTTGCGGGCCAGGATCCTCGTCAGACCGGACCCGCACTTCTGTGGTCAACGGGTTGAAAAAGAAGCTGAAAGACTCCATGGAGAGCTTCAATAGCCTCAGGCAGCAGATCTCAACGGAATACCGGGAGACTGTACAACGCAGGTATTTTACAGTCACCGGCGAAAACCCCGATGAGAAGACCGTCGATCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCCAAGAACAGGGTAGAGGCAGGATTCTGGATACTATCAATGAGATTCAAGAGAGGCATGATGCGGTGAAAGAGATAGAGAAGAATCTGAAGGAGCTGCATCAAGTGTTCCTTGACATGGCAGTGTTGGTGGAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCGTTTGTGAGGAGTGGAGCTGAGCAGTTGCAGACTGCGAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTATTACGATTCTCCTGGTGATCATCTTGTTTGTGGTTCTTTTCACTGTCAGACCATGGGAAAATAAAGGTGGCGGTGGCGGAGGCGGAAGTGGCAGTGGTAATCAGCCAGCTTCACCTCAAACACCTCCTCCACCGCCTCCGCCTTCTAGAAGGTAA 1005 0.5274 MNDLFSGSFSRLRHEQASPAHHVIEMASTTPTGGVNLDKFFDNVESIKDELKELDRLNQNLQSCHEQGKTLHNAKAVKDLRSRMDIDVSIALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNSLRQQISTEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRSGAEQLQTARKHQKNTRKWTCYAITILLVIILFVVLFTVRPWENKGGGGGGGSGSGNQPASPQTPPPPPPPSRR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2777 334 Coils Coil 37 67 - -
Prci3g2777 334 Gene3D - 35 167 - -
Prci3g2777 334 Pfam SNARE domain 243 295 IPR000727 -
Prci3g2777 334 MobiDBLite consensus disorder prediction 320 334 - -
Prci3g2777 334 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Prci3g2777 334 CDD SNARE_syntaxin1-like 206 268 - -
Prci3g2777 334 SMART SynN_4 32 158 IPR006011 GO:0016020
Prci3g2777 334 Coils Coil 132 152 - -
Prci3g2777 334 Coils Coil 207 227 - -
Prci3g2777 334 MobiDBLite consensus disorder prediction 305 334 - -
Prci3g2777 334 SMART tSNARE_6 202 269 IPR000727 -
Prci3g2777 334 FunFam Syntaxin 132 200 300 - -
Prci3g2777 334 CDD SynN 37 194 IPR006011 GO:0016020
Prci3g2777 334 Gene3D - 204 300 - -
Prci3g2777 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Prci3g2777 334 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Prci3g2777 334 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci3g2777 334 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Prci3g2777 334 PANTHER SYNTAXIN 45 291 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2777 Prci-Chr3 39792228 39794230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2777 32 334 SNARE and Associated Proteins AT3G11820 77.961 5.11e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2777 K08486 - rcu:8259763 505.753