Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2775 ATGGCCATGCAAACTGTTTATTTCAAAGAACATGAAGGAATTGTCCACAATTCCATTGGACAATTGTCATCTGTAACTTCAGCCCCCTGGTGGACTGCCCATGGATCTCAAACAGTTCAGCAGGAGTCTTTTGGCCAAATGAAACATTTCTCACTGGACTTTCCCAACTATGTCGACCAACTCACGGGCCCAAAGCAGCCGGGAAGAGCATCTCATCATGTGTTGGATAAAGGACACACAACACAGTTCACTATCTTCCCAGATTGCGAGATGTCAGACGATACACCAAAGCATCAGGCATTTATGTCAATTCATGGATCATCTCCTGAACCTCGTGGTCATTTTGAAATAAAATTTAATCAGCCTATGATCTGTTCAAAATATGCTTATATGGATAGACTTTATGGGCTCATCTCAACTTATGGACCTCAAATTCCGGGCCGTTTGATGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTATCATGGAATCATCCGGCGTCGGCAGTCACGCGCAAAGGCTTTACTCGAGAATAAATTAACAAAACGGCGCAGGCCCTACATGCATGAATCACGTCACCTCCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGAAATCTGAAAAATGGGAATGGTGAAAGCGCAGTGAACAAAACTGTGGAGGGTCTATTCCAGTCTAGTGGCTCTCAGAGTTCTGAAGTTCTGCAATCAGAGGGTGGAACTCTGAATTCATCAAAGGAAACCAACGGTAGCAGTTCACATGTTTCAGGGTTGGAGGTGACTAGCATGTATGCACGTGGAACTTTTGATGGCTTTGGTCTCAATCATGTGGGATCCCCTGTGCACTCTCTTGCAGACATGATAGATAGTGGACGTGGCATTGCCATGCCCGCAAAATGGGTTTCAGCAGCGGGTAACTGCTGCAAACTCTAA 975 0.4554 MAMQTVYFKEHEGIVHNSIGQLSSVTSAPWWTAHGSQTVQQESFGQMKHFSLDFPNYVDQLTGPKQPGRASHHVLDKGHTTQFTIFPDCEMSDDTPKHQAFMSIHGSSPEPRGHFEIKFNQPMICSKYAYMDRLYGLISTYGPQIPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLENKLTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKNGNGESAVNKTVEGLFQSSGSQSSEVLQSEGGTLNSSKETNGSSSHVSGLEVTSMYARGTFDGFGLNHVGSPVHSLADMIDSGRGIAMPAKWVSAAGNCCKL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2775 324 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 MobiDBLite consensus disorder prediction 241 269 - -
Prci3g2775 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 43 275 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Prci3g2775 324 Gene3D - 158 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2775 Prci-Chr3 39781779 39786503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2775 1 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.698 1.49e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2775 CBFB_NFYA 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2775 K08064 - gmx:100527677 438.343