Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2774 ATGGCCATGCAAACTGTTTATTTCAAAGAACATGAAGGAATTGTCCACAATTCCATTGGACAATTGTCATCTGTAACTTCAGCCCCCTGGTGGACTGCCCATGGATCTCAAACAGTTCAGCAGGAGTCTTTTGGCCAAATGAAACATTTCTCACTGGACTTTCCCAACTATGTCGACCAACTCACGGGCCCAAAGCAGCCGGGAAGAGCATCTCATCATGTGTTGGATAAAGGACACACAACACAGTTCACTATCTTCCCAGAAGATTGCGAGATGTCAGACGATACACCAAAGCATCAGGCATTTATGTCAATTCATGGATCATCTCCTGAACCTCGTGGTCATTTTGAAATAAAATTTAATCAGCCTATGATCTGTTCAAAATATGCTTATATGGATAGACTTTATGGGCTCATCTCAACTTATGGACCTCAAATTCCGGGCCGTTTGATGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTATCATGGAATCATCCGGCGTCGGCAGTCACGCGCAAAGGCTTTACTCGAGAATAAATTAACAAAACGGCGCAGGCCCTACATGCATGAATCACGTCACCTCCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGAAATCTGAAAAATGGGAATGGTGAAAGCGCAGTGAACAAAACTGTGGAGGGTCTATTCCAGTCTAGTGGCTCTCAGAGTTCTGAAGTTCTGCAATCAGAGGGTGGAACTCTGAATTCATCAAAGGAAACCAACGGTAGCAGTTCACATGTTTCAGGGTTGGAGGTGACTAGCATGTATGCACGTGGAACTTTTGATGGCTTTGGTCTCAATCATGTGGGATCCCCTGTGCACTCTCTTGCAGACATGATAGATAGTGGACGTGGCATTGCCATGCCCGCAAAATGGGTTTCAGCAGCGGGTAACTGCTGCAAACTCTAA 978 0.455 MAMQTVYFKEHEGIVHNSIGQLSSVTSAPWWTAHGSQTVQQESFGQMKHFSLDFPNYVDQLTGPKQPGRASHHVLDKGHTTQFTIFPEDCEMSDDTPKHQAFMSIHGSSPEPRGHFEIKFNQPMICSKYAYMDRLYGLISTYGPQIPGRLMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLENKLTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKNGNGESAVNKTVEGLFQSSGSQSSEVLQSEGGTLNSSKETNGSSSHVSGLEVTSMYARGTFDGFGLNHVGSPVHSLADMIDSGRGIAMPAKWVSAAGNCCKL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2774 325 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 Gene3D - 159 221 - -
Prci3g2774 325 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 276 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Prci3g2774 325 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2774 Prci-Chr3 39781779 39786503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2774 1 325 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.159 1.25e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2774 CBFB_NFYA 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2774 K08064 - gmx:100527677 443.736