Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2726 ATGGAATCTCAGGTCAAGCATGCTGTGGTTGTTAAAGTCATGGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTTACCTTGCTTGAGTCTGAAAGGGAAGCCAGAAGACTTCGCTAG 198 0.4495 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2726 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci3g2726 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Prci3g2726 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci3g2726 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci3g2726 65 FunFam 40S ribosomal protein S28 1 65 - -
Prci3g2726 65 Gene3D - 1 65 IPR012340 -
Prci3g2726 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Prci3g2726 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2726 Prci-Chr3 39552056 39554089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2726 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 9.16e-37 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2726 K02979 - csv:101217106 101.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2726 3 39552056 39554089 Prci3g2726 3 39552056 39554089 ECH