Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2671 ATGGAGCTGGCTTTGAGCTTGGGAGACGCACCAAAGGGCTTCCCTATACTGGACAAGGCCCCGAGAATGCCTAACAAGGAAGCTGGTTTCAGCATGTCACTTGGCCAAGTTCTCGCCGACAATACCTCCGAGGAAGTCCAAGATGAGAGAAGAGCATCCTCAGATCCGCCTCTTCAGCTCGACCTTCTTCCTTTCACTCCCGTTCCCCGGCCCCTCCCTCCTTCCCATCTTCGGATTCCTTGGCTCTCCGATTCTCTGGGATCCCAACGTTTCTCGCCGGATGGAGGAGCGAAGGCCCTGGACGTCAATCGTTTACCTGCTGCGGTAGCGGAGGAGGCGGACGACGGTACTCCACTGTCGTCGTCTCCTAACAGCGTTTCGTCATTTCACATGGACTTCTACACAAGGAATGGTAATGCTGGCAGTAAAAACAAGAGAGAGCACGAGGGCGAGGGTGAGAGAACCAGCTCTAGGGCCAGTGACGATGATGAAAACGGGTCGACTCGCAAGAAACTCAGGCTCTCCAAGGAACAATCCGCTTTTCTTGAAGAGAGTTTCAAAGAACACACTACACTTAATCCTAAGCAGAAACTTGTTCTGGCAAAACAATTAAACCTTCGTCCCCGACAAGTAGAAGTTTGGTTTCAGAACAGGAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGCGAGTATCTAAAGAGATGCTGTGAGACGTTGACGGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAGGAGCTGAGGGCTTTAAAGACGTCCCAGCCATTTTACATGCAGCTTCCAGCTACGACTCTAACAATGTGTCCCTCCTGCGAAAGGGTGGCCACCAACTCATCATCGTCTGCGTCCGCATTAACCTCCGTCACGGCCCCCAGTAACGCCTCTCAAGCCTCGCAACTCTTGTCTTACCAACCCCAGAACTGTGACTCCTTCCTCATGATCGCATTGTGA 975 0.521 MELALSLGDAPKGFPILDKAPRMPNKEAGFSMSLGQVLADNTSEEVQDERRASSDPPLQLDLLPFTPVPRPLPPSHLRIPWLSDSLGSQRFSPDGGAKALDVNRLPAAVAEEADDGTPLSSSPNSVSSFHMDFYTRNGNAGSKNKREHEGEGERTSSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSSSSASALTSVTAPSNASQASQLLSYQPQNCDSFLMIAL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2671 324 ProSitePatterns 'Homeobox' domain signature. 200 223 IPR017970 GO:0000981|GO:0006355
Prci3g2671 324 MobiDBLite consensus disorder prediction 141 174 - -
Prci3g2671 324 MobiDBLite consensus disorder prediction 117 140 - -
Prci3g2671 324 Gene3D - 173 223 - -
Prci3g2671 324 Coils Coil 231 261 - -
Prci3g2671 324 SMART HOX_1 167 229 IPR001356 GO:0003677
Prci3g2671 324 CDD homeodomain 169 226 IPR001356 GO:0003677
Prci3g2671 324 SMART halz 225 268 IPR003106 GO:0006355|GO:0043565
Prci3g2671 324 Pfam Homeobox associated leucine zipper 225 259 IPR003106 GO:0006355|GO:0043565
Prci3g2671 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 300 - -
Prci3g2671 324 ProSiteProfiles 'Homeobox' domain profile. 165 225 IPR001356 GO:0003677
Prci3g2671 324 Pfam Homeodomain 169 223 IPR001356 GO:0003677
Prci3g2671 324 MobiDBLite consensus disorder prediction 111 174 - -
Prci3g2671 324 MobiDBLite consensus disorder prediction 40 67 - -
Prci3g2671 324 SUPERFAMILY Homeodomain-like 160 226 IPR009057 -
Prci3g2671 324 FunFam Homeobox-leucine zipper protein 18 154 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2671 Prci-Chr3 39256569 39258292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2671 23 289 Homeobox Transcription Factor Family AT5G47370 51.449 4.01e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci3g2671 Homeodomain 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2671 K09338 - qsa:O6P43_005825 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3166 1 49644357 49646790 Prci3g2671 3 39256569 39258292 CCT
Prci3g2671 3 39256569 39258292 Prci3g2671 3 39256569 39258292 ECH