Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2670 ATGGAGGAACAGACATCTGATCCGATGAACCTTGATTTGAATCTGGGTCTCATTCCAGAGCCACCGGCCGATTCCATGGCCAGCGAACATGTCTTTGTAGATGACTGGACCGAGCAACCTCTTCGCCGAATTAGTGAAGCTCGTCGGTATAGGTCTCGGCTACAGTGGAGATCGCAGCATCTTGTTGTCCCGCCCGATGCCGAGAGGCATGTTTTTCCGCTGCCTGAATCCGAAAATATTCCGATGGAATTAAATGAATTTGTGGAGACCCCTGGCATTGGGACTGCCCTGCGGACTGGTCAGGACAGTGTTGAAGCCGACATGAGACCGGAGGAGGTACAGAAAGCATGTGAAAATAACAACAGCTTAACGAGGGATGAGGGATCAGAGAAGAAGGATGATGTTGAAAAGGGTGGCGGCGATGATGGGGGCTTTTTCGACTGTAATGTCTGTTTGGACATGGCCAGGGATCCCGTTGTTACTTGCTGCGGTCATTTGTTTTGTTGGCCCTGCCTCTATCAGTGGCTGCATATGAATCCGGATGCCAAGGAATGTCCTGTGTGCAAGGGTGAGGTGTCTTACAAGAATATCACCCCAATATATGGTCGTGGAAACAACCATGTTCAAGATCCTGAGGAGGATCCCAGCCTCAAAGTCCCTCTCAGGCCTCATGCAAGGCGTGTTGAGAGTTTAAGACCAAGATTCCAGAGAAGTGGATTTGGAATTCCCCATGCAAGGGGTGTGGTTCGCCCCCATGACCCTGAAACCGTGCGTGAAACAGCAGAGAGAACGAGATTCTTGCTAGACAGATTTTTGACGTCTCGAGCAATTCGGAGAGAGCAAAATCGCGGGGCATTGCCGGATGATGCAGCATATCTAGCGGAAAGCAATATGGGTAGTCTTGACTCAGGCGATAACAACAGGCTGCAATCCCTTCTACTTCGAAGAACACAATCACACAGAGCAACACTTTCATCTCTTTCCTCAGCTTTGATGGAGACATATTTCCTGACCCGCGGAGGAGTTAGGAACCAAGAACAGTCTCCACCGGTAGATGATAGAGATTCATATTCAAGCATTGCTGCTGTTATAAATTCGGAGAGTCAAATGGACACTGCCGTAGAAATTGATTCCATGGTATCACTGTCCACATCCTCTTCCAGAAGGAGAAGCGATTCTTCTAGAGTTTCTGATGTAGATACTGGAGACTCTCGTGCTCCCAGGTCTAGGAGAAGACGTTTAAATTGA 1248 0.488 MEEQTSDPMNLDLNLGLIPEPPADSMASEHVFVDDWTEQPLRRISEARRYRSRLQWRSQHLVVPPDAERHVFPLPESENIPMELNEFVETPGIGTALRTGQDSVEADMRPEEVQKACENNNSLTRDEGSEKKDDVEKGGGDDGGFFDCNVCLDMARDPVVTCCGHLFCWPCLYQWLHMNPDAKECPVCKGEVSYKNITPIYGRGNNHVQDPEEDPSLKVPLRPHARRVESLRPRFQRSGFGIPHARGVVRPHDPETVRETAERTRFLLDRFLTSRAIRREQNRGALPDDAAYLAESNMGSLDSGDNNRLQSLLLRRTQSHRATLSSLSSALMETYFLTRGGVRNQEQSPPVDDRDSYSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDTGDSRAPRSRRRRLN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2670 415 CDD RING-HC_RNF5-like 148 189 - -
Prci3g2670 415 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Prci3g2670 415 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Prci3g2670 415 MobiDBLite consensus disorder prediction 391 409 - -
Prci3g2670 415 Pfam Zinc finger, C3HC4 type (RING finger) 148 188 - -
Prci3g2670 415 MobiDBLite consensus disorder prediction 111 138 - -
Prci3g2670 415 FunFam Zinc finger family protein 129 202 - -
Prci3g2670 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 226 IPR013083 -
Prci3g2670 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 116 326 IPR045103 GO:0005783|GO:0006511|GO:0061630
Prci3g2670 415 MobiDBLite consensus disorder prediction 124 138 - -
Prci3g2670 415 SMART ring_2 148 188 IPR001841 -
Prci3g2670 415 SUPERFAMILY RING/U-box 144 201 - -
Prci3g2670 415 MobiDBLite consensus disorder prediction 380 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2670 Prci-Chr3 39245926 39248022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2670 1 404 C3H Transcription Factor Family AT3G58030 46.241 9.53e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2670 K10666 - pcin:129304364 739.954