Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2656 ATGCCATGCTCATCTCAATTCTTGACCATCAAAATTAAATCTTTACCGCCCTCTCTCGAAACCTCTCCAGCTGTGTCTCCAAAACCCTCTTCTAGGGTTTGGGCTGTGCTCCCCAGAGGGAGGGTTGAAGCTGGAGCCAATGTTAACGGCGCTTCCAAGAAGTCCAAGCAAGAAATGGACTCCTTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCAGGTGGTTATAACGCTGTTGCCCAGATGATGAATTTGACACCAGCTGTGCCTCCGGCGTCTAGAAATTTTGCTGTCCCTCCACCTATCCCCAATGGGACCGCACCACCCACTGTTAAAACCCGCATATGCAATAAATACAATACTGCTGAGGGCTGTAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGCCTATTGCTACATCAGTGGATGATCATCGTACTATGGGACCTATTTCCAGCCGCTCAGCTTCTCGGATGGAGCCTCCTCCAGGTCCTGTTGGTAGTTTTGGTGCCAATGCCACTGCTAAGATCAGTGTTGAAGCTTCATTGGCCGGAGCTATCATAGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGCCGCCAAACAGGAGCCAAACTTACAATTCGGGATCATGAGTCAGATCCAAATTTAAGGAACATCGAACTTGAAGGTAGTTTTGAGCAAATTAAGAATGCGAGCAACATGGTAAAAGAGTTGCTGGTGACATTATCAATATCGGCGCCACCTAAAACTCATGGCGTTTCCGGAGCACCAGGTTCACATGGAAGTAACTACAAGACGAAGCTGTGCGAGAATTTTGCTAAAGGATCTTGCACCTTTGGGGAAAGATGTCACTTTGCGCATGGGGCTGCCGAATTACGTAAAGCAGGAGTATGA 981 0.4801 MPCSSQFLTIKIKSLPPSLETSPAVSPKPSSRVWAVLPRGRVEAGANVNGASKKSKQEMDSLSSGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLTPAVPPASRNFAVPPPIPNGTAPPTVKTRICNKYNTAEGCKFGDKCHFAHGEWELGKPIATSVDDHRTMGPISSRSASRMEPPPGPVGSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLTIRDHESDPNLRNIELEGSFEQIKNASNMVKELLVTLSISAPPKTHGVSGAPGSHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2656 326 PANTHER CCCH ZINC FINGER/TIS11-RELATED 45 171 IPR045877 GO:0003729
Prci3g2656 326 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 190 270 IPR036612 GO:0003723
Prci3g2656 326 SUPERFAMILY CCCH zinc finger 68 93 IPR036855 GO:0046872
Prci3g2656 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 317 IPR000571 GO:0046872
Prci3g2656 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 159 IPR000571 GO:0046872
Prci3g2656 326 Gene3D K Homology domain, type 1 197 291 IPR036612 GO:0003723
Prci3g2656 326 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Prci3g2656 326 MobiDBLite consensus disorder prediction 50 69 - -
Prci3g2656 326 Pfam KH domain 203 266 IPR004088 GO:0003723
Prci3g2656 326 SUPERFAMILY CCCH zinc finger 130 163 IPR036855 GO:0046872
Prci3g2656 326 SMART kh_6 199 269 IPR004087 GO:0003676
Prci3g2656 326 ProSiteProfiles Type-1 KH domain profile. 200 264 - -
Prci3g2656 326 MobiDBLite consensus disorder prediction 49 69 - -
Prci3g2656 326 ProSiteProfiles Zinc finger C3H1-type profile. 292 319 IPR000571 GO:0046872
Prci3g2656 326 CDD KH-I_AtC3H36_like 203 268 - -
Prci3g2656 326 SMART c3hfinal6 67 94 IPR000571 GO:0046872
Prci3g2656 326 SMART c3hfinal6 292 318 IPR000571 GO:0046872
Prci3g2656 326 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Prci3g2656 326 Pfam RNA-binding, Nab2-type zinc finger 72 92 - -
Prci3g2656 326 MobiDBLite consensus disorder prediction 171 190 - -
Prci3g2656 326 FunFam Zinc finger CCCH domain-containing protein 127 164 - -
Prci3g2656 326 Gene3D - 292 324 - -
Prci3g2656 326 Gene3D - 127 164 - -
Prci3g2656 326 SUPERFAMILY CCCH zinc finger 291 322 IPR036855 GO:0046872
Prci3g2656 326 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Prci3g2656 326 FunFam Zinc finger CCCH domain-containing protein 287 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2656 Prci-Chr3 39141041 39144967 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g2656 KH_1 1.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2656 - - pcin:129305106 664.84