Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2655 ATGTTCGAGGAGAGGAAGCCGTCAGCATTAGTAGCTTTACCGCCCTCTCTCGAAACCTCTCCAGCTGTGTCTCCAAAACCCTCTTCTAGGGTTTGGGCTGTGCTCCCCAGAGGGAGGGTTGAAGCTGGAGCCAATGTTAACGGCGCTTCCAAGAAGTCCAAGCAAGAAATGGACTCCTTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCAGGTGGTTATAACGCTGTTGCCCAGATGATGAATTTGACACCAGCTGTGCCTCCGGCGTCTAGAAATTTTGCTGTCCCTCCACCTATCCCCAATGGGACCGCACCACCCACTGTTAAAACCCGCATATGCAATAAATACAATACTGCTGAGGGCTGTAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGCCTATTGCTACATCAGTGGATGATCATCGTACTATGGGACCTATTTCCAGCCGCTCAGCTTCTCGGATGGAGCCTCCTCCAGGTCCTGTTGGTAGTTTTGGTGCCAATGCCACTGCTAAGATCAGTGTTGAAGCTTCATTGGCCGGAGCTATCATAGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGCCGCCAAACAGGAGCCAAACTTACAATTCGGGATCATGAGTCAGATCCAAATTTAAGGAACATCGAACTTGAAGGTAGTTTTGAGCAAATTAAGAATGCGAGCAACATGGTAAAAGAGTTGCTGGTGACATTATCAATATCGGCGCCACCTAAAACTCATGGCGTTTCCGGAGCACCAGGTTCACATGGAAGTAACTACAAGACGAAGCTGTGCGAGAATTTTGCTAAAGGATCTTGCACCTTTGGGGAAAGATGTCACTTTGCGCATGGGGCTGCCGAATTACGTAAAGCAGGAGTATGA 975 0.4872 MFEERKPSALVALPPSLETSPAVSPKPSSRVWAVLPRGRVEAGANVNGASKKSKQEMDSLSSGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLTPAVPPASRNFAVPPPIPNGTAPPTVKTRICNKYNTAEGCKFGDKCHFAHGEWELGKPIATSVDDHRTMGPISSRSASRMEPPPGPVGSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLTIRDHESDPNLRNIELEGSFEQIKNASNMVKELLVTLSISAPPKTHGVSGAPGSHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2655 324 ProSiteProfiles Zinc finger C3H1-type profile. 65 93 IPR000571 GO:0046872
Prci3g2655 324 PANTHER CCCH ZINC FINGER/TIS11-RELATED 45 169 IPR045877 GO:0003729
Prci3g2655 324 MobiDBLite consensus disorder prediction 44 67 - -
Prci3g2655 324 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 188 268 IPR036612 GO:0003723
Prci3g2655 324 SUPERFAMILY CCCH zinc finger 66 91 IPR036855 GO:0046872
Prci3g2655 324 SMART c3hfinal6 65 92 IPR000571 GO:0046872
Prci3g2655 324 SMART c3hfinal6 290 316 IPR000571 GO:0046872
Prci3g2655 324 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Prci3g2655 324 MobiDBLite consensus disorder prediction 1 29 - -
Prci3g2655 324 CDD KH-I_AtC3H36_like 201 266 - -
Prci3g2655 324 Gene3D K Homology domain, type 1 195 289 IPR036612 GO:0003723
Prci3g2655 324 Pfam KH domain 201 264 IPR004088 GO:0003723
Prci3g2655 324 MobiDBLite consensus disorder prediction 169 188 - -
Prci3g2655 324 ProSiteProfiles Zinc finger C3H1-type profile. 290 317 IPR000571 GO:0046872
Prci3g2655 324 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Prci3g2655 324 FunFam Zinc finger CCCH domain-containing protein 285 321 - -
Prci3g2655 324 Pfam RNA-binding, Nab2-type zinc finger 70 90 - -
Prci3g2655 324 SMART kh_6 197 267 IPR004087 GO:0003676
Prci3g2655 324 Gene3D - 125 162 - -
Prci3g2655 324 Gene3D - 290 322 - -
Prci3g2655 324 FunFam Zinc finger CCCH domain-containing protein 125 162 - -
Prci3g2655 324 SUPERFAMILY CCCH zinc finger 128 161 IPR036855 GO:0046872
Prci3g2655 324 MobiDBLite consensus disorder prediction 48 67 - -
Prci3g2655 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 157 IPR000571 GO:0046872
Prci3g2655 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 291 315 IPR000571 GO:0046872
Prci3g2655 324 SUPERFAMILY CCCH zinc finger 289 320 IPR036855 GO:0046872
Prci3g2655 324 ProSiteProfiles Type-1 KH domain profile. 198 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2655 Prci-Chr3 39140005 39144967 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g2655 KH_1 1.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2655 - - pcin:129305106 637.876