Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2654 ATGGACTCCTTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCAGGTGGTTATAACGCTGTTGCCCAGATGATGAATTTGACACCAGCTGTGCCTCCGGCGTCTAGAAATTTTGCTGTCCCTCCACCTATCCCCAATGGGACCGCACCACCCACTGTTAAAACCCGCATATGCAATAAATACAATACTGCTGAGGGCTGTAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGCCTATTGCTACATCAGTGGATGATCATCGTACTATGGGACCTATTTCCAGCCGCTCAGCTTCTCGGATGGAGCCTCCTCCAGGTCCTGTTGGTAGTTTTGGTGCCAATGCCACTGCTAAGATCAGTGTTGAAGCTTCATTGGCCGGAGCTATCATAGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGCCGCCAAACAGGAGCCAAACTTACAATTCGGGATCATGAGTCAGATCCAAATTTAAGGAACATCGAACTTGAAGGTAGTTTTGAGCAAATTAAGAATGCGAGCAACATGGTAAAAGAGTTGCTGGTGACATTATCAATATCGGCGCCACCTAAAACTCATGGCGTTTCCGGAGCACCAGGTTCACATGGAAGTAACTACAAGACGAAGCTGTGCGAGAATTTTGCTAAAGGATCTTGCACCTTTGGGGAAAGATGTCACTTTGCGCATGGGGCTGCCGAATTACGTAAAGCAGGAGTATGA 807 0.4771 MDSLSSGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLTPAVPPASRNFAVPPPIPNGTAPPTVKTRICNKYNTAEGCKFGDKCHFAHGEWELGKPIATSVDDHRTMGPISSRSASRMEPPPGPVGSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLTIRDHESDPNLRNIELEGSFEQIKNASNMVKELLVTLSISAPPKTHGVSGAPGSHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2654 268 Gene3D K Homology domain, type 1 138 233 IPR036612 GO:0003723
Prci3g2654 268 ProSiteProfiles Zinc finger C3H1-type profile. 234 261 IPR000571 GO:0046872
Prci3g2654 268 SUPERFAMILY CCCH zinc finger 10 35 IPR036855 GO:0046872
Prci3g2654 268 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 123 IPR045877 GO:0003729
Prci3g2654 268 FunFam Zinc finger CCCH domain-containing protein 229 265 - -
Prci3g2654 268 ProSiteProfiles Zinc finger C3H1-type profile. 74 102 IPR000571 GO:0046872
Prci3g2654 268 SUPERFAMILY CCCH zinc finger 233 264 IPR036855 GO:0046872
Prci3g2654 268 SMART kh_6 141 211 IPR004087 GO:0003676
Prci3g2654 268 MobiDBLite consensus disorder prediction 113 132 - -
Prci3g2654 268 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 259 IPR000571 GO:0046872
Prci3g2654 268 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 76 101 IPR000571 GO:0046872
Prci3g2654 268 ProSiteProfiles Type-1 KH domain profile. 142 206 - -
Prci3g2654 268 CDD KH-I_AtC3H36_like 145 210 - -
Prci3g2654 268 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Prci3g2654 268 SMART c3hfinal6 234 260 IPR000571 GO:0046872
Prci3g2654 268 SMART c3hfinal6 74 101 IPR000571 GO:0046872
Prci3g2654 268 SUPERFAMILY CCCH zinc finger 72 105 IPR036855 GO:0046872
Prci3g2654 268 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 131 212 IPR036612 GO:0003723
Prci3g2654 268 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Prci3g2654 268 Pfam RNA-binding, Nab2-type zinc finger 14 34 - -
Prci3g2654 268 Gene3D - 234 266 - -
Prci3g2654 268 Gene3D - 69 106 - -
Prci3g2654 268 FunFam Zinc finger CCCH domain-containing protein 69 106 - -
Prci3g2654 268 Pfam KH domain 145 208 IPR004088 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci3g2654 Prci-Chr3 39138769 39144967 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g2654 KH_1 1.1e-12 CL0007
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2654 - - pcin:129305106 551.592