Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2653 ATGAAGCTAATTTGTGGTGAGAGGGCCACTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGGAGATGGTGACTTCTTGCTTGGCACAGAAGACAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCAAAGGATGAGATTGCTTTATTGCAAAGGGAGAGTGATATGCCTGTTGAGGAACTCCTTGGAATGTATAAAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTATCAGAGGATCTTTTGGATTCTTCACTGCTTGAAGATGATGCGAAGAACGATCCTGTTGTTTCTGGGGATGAACATGTCAAGCCTTTTGAACACATGGCTTTTGTACAGTCCCATACTGAAGAACAACATTGGGAAGCACCTCATGAAAATCTGGAGGGAAGGGAGAGTGAAAATCTGATTGCAGATGCAGCAGCGGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTCCGCACAAAATTCCCTTTTCTTCTGAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGACTGGCTTGTAACAATGTATGAAAAAAGGTTGAATGGGATTTTGGCAGATGAAATGGGGCTCGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCGCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGTAGTGCAAAAGAGCGGAAGCTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCGAAGAGACGTATTCTCTTGACTGGTACACCGCTGCAGAATGATCTTATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCACCAAGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGCATGGTGGAGGGAGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGCAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGTATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAGCCCCTTTTCATCAGTAGACCTAAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTAATGAGACCCCTGCGAGTTTAATTATGGAGCGTGCTGATATGAATGCCCTACAAGTATTTAGGCCTGAATCGAAGGATCAGAAAAGTTTCCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGTGAAGGAACGTGCGGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAGAAGGCCTGTCTATTCAACAACCCTTCAGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACAGGTATTCCTCAAAGCTAGCTGACATTGTCCTCTCACCAATTGAACGGTTCCAAAAGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACGCCTGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGCTTTGTCACCCCTTCTGTCACCAATCAGGCCAGCAATTGTCCGACGGCAGGTTTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACACAAATGACAAAGATGCTTGACATATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTGGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATCGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATTCAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCCATGGAGTTATTTTCAGGTCATAGAACAGTTCCTGTGAAAAATATGCAGAAGGAGAAAAGCCAGAACAGTGGGGATGAAGCTTCTGTAAGTATTGCAGATGTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTAGAACTGGAAGAAGCTGTGGAAAATCAGGAGTTCACAGAAGAAGCTATTGGGAGACTTGATGAGGATGAGTACATAAATGAAGATGATATTAAAGTGGATGAGCCTTCAGAATTAGCTGAATCAGTTTCCAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACATCTCTCTGTATCTATCAAAGATGATGATGTTGACATGCTAGCTGATGTCAAACAGATGGCTGCGGCTGCAGCTGCTGCTGGACAAGCTATATCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGATTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCGGCCTTGGAATCTGAAGTTAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGGCAGCAAGTAGAGACCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAAGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGGCCTAAAAAGAAACCCAAGAAAACCAAGTTTAAATCGCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAGCCTATGAAAGAAGAGCCACAAATAGACCCGATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCATGCATCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACGATAAAGAAGTCCAAGAAAACCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCGGATGAACATGCAGAATCAAAGCAATATGAAGGTATGATTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAGATGGGAGGGAAAATAACCATAACTCCAATGCCAGTCAAACGTATTCTGACAATAAAACCAGAAAAAATGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCGTCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGCTTGGTTAGTGAAACACTCTACGGTATGACTGCTGGAGGATCATACAGGGGGAGATACCGTCATGCTGTCCATTGCTGCGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCCATGACAGACAATGCTAATCACGAGAGGGGCAACAATGCTGGCTCTGGGAAGTCTCTTCTTAAAGTTACAGAGGATAACATTAGGATGTTGTTAGATGTCGCCTCTGAGCAGGAAAATAGGGAGTTATTACTGCAAAAGCATTTTTTTGCACTGCTTTCTTCTGTGTGGAAGGCAGGATCACATGTTGACCGAAGGCAAAATCCGCCCCCCACACAAAATGGCCACTATGGTTTCTTTACTTCCACCGGGCATAATTCTCAGAGCCTTATGAAGAAGCCTTCTGAAAGGATGACGGTCACTAATCTGGCAGAGAGCAGAAAGTTATTGGCTGCTGCACTTGATGACACCGGCAGTAGGCAGCAGCATGACAAAATCTCCCTCTCAAATAAGAGTGACAATGTGCCACTGACCACAGATCAGCTGGTTGTGTCTCTGGAATTCCCGAAAGAAGAGAATGACACCTTAATCTCATTCCCTTCTGTTATAAATTTATCTATACAGGAGACGGAACCCCTACCATCGTTAATTTACCCTATTGGGGAAGATAATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGTTTCAGGGAGGCAGCCAGAGCTTGCGGGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGAGCAGGATCCAAGATACAAGCTTCGGGGAAGCACAAGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCAAAGTCCAAACGAAATTCATCAGATACTTGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCAATGCCATCACTTGAAGCCAAGGATCTGAGAATTGATCTTAATTCATTAGCAATGGACGAAGCGGGGGCTGATAATATGGATTGCAATCTACCCTTTGTCCTGAATGAGGAAAATTCGTTGGAAACAGAGACTTTTGGCATGGTTCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACCGACATTGGATAA 5175 0.4176 MKLICGERATENLAYDFSDEEGDGDFLLGTEDNDDETTLSEEEKLEKMDAIDPKDEIALLQRESDMPVEELLGMYKKYSSGKHREDESEDAASLSEDLLDSSLLEDDAKNDPVVSGDEHVKPFEHMAFVQSHTEEQHWEAPHENLEGRESENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWESDEVKANETPASLIMERADMNALQVFRPESKDQKSFQGTNIFEEIQRAIWEERLREVKERAAAIAWWNSLRCKRRPVYSTTLQDLLTIRHPVYDIHQVKANPRSYRYSSKLADIVLSPIERFQKMVDVVESFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEALSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTVPVKNMQKEKSQNSGDEASVSIADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYINEDDIKVDEPSELAESVSKSSKENALMLVGSDPKEERHLSVSIKDDDVDMLADVKQMAAAAAAAGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVETLAQHQLMEELENEAKQKEEADEENCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQIDPMSIDDEIVTSLDHASPNSTMQKKRKKPKFIADGEEEKTIKKSKKTKRAADICASDSDNALLGLPDEHAESKQYEGMIESEQKPPSRSKMGGKITITPMPVKRILTIKPEKMKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHAVHCCERFRELVQKYVLSMTDNANHERGNNAGSGKSLLKVTEDNIRMLLDVASEQENRELLLQKHFFALLSSVWKAGSHVDRRQNPPPTQNGHYGFFTSTGHNSQSLMKKPSERMTVTNLAESRKLLAAALDDTGSRQQHDKISLSNKSDNVPLTTDQLVVSLEFPKEENDTLISFPSVINLSIQETEPLPSLIYPIGEDNHLRACGSVAEDRFREAARACGEDSCGWASSVFPTNDARSRAGSKIQASGKHKSSISDSIKPSKSKSKRNSSDTCEMRHQRVEPLFQSMPSLEAKDLRIDLNSLAMDEAGADNMDCNLPFVLNEENSLETETFGMVPHDFVAGLISGLDDCSELPEYTDIG 1724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2653 1724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 410 IPR027417 -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1175 1194 - -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1602 1619 - -
Prci3g2653 1724 Pfam SNF2-related domain 205 477 IPR000330 GO:0005524|GO:0140658
Prci3g2653 1724 Coils Coil 947 967 - -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1134 1159 - -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1134 1223 - -
Prci3g2653 1724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 914 IPR027417 -
Prci3g2653 1724 Gene3D - 695 948 IPR027417 -
Prci3g2653 1724 SMART helicmild6 759 842 IPR001650 -
Prci3g2653 1724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 883 IPR001650 -
Prci3g2653 1724 SMART ultradead3 184 377 IPR014001 -
Prci3g2653 1724 CDD DEXQc_SRCAP 188 410 - -
Prci3g2653 1724 Coils Coil 1122 1145 - -
Prci3g2653 1724 CDD SF2_C_SNF 718 853 - -
Prci3g2653 1724 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 434 499 - -
Prci3g2653 1724 Pfam Helicase conserved C-terminal domain 730 842 IPR001650 -
Prci3g2653 1724 Gene3D - 434 486 - -
Prci3g2653 1724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 365 IPR014001 -
Prci3g2653 1724 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 695 949 - -
Prci3g2653 1724 Gene3D - 157 433 IPR038718 -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1620 1640 - -
Prci3g2653 1724 Coils Coil 1074 1094 - -
Prci3g2653 1724 ProSiteProfiles Myb-like domain profile. 1322 1375 IPR001005 -
Prci3g2653 1724 PANTHER HELICASE SRCAP-RELATED 19 1624 - -
Prci3g2653 1724 FunFam Photoperiod-independent early flowering 1 158 433 - -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1160 1174 - -
Prci3g2653 1724 Gene3D - 1318 1379 - -
Prci3g2653 1724 MobiDBLite consensus disorder prediction 1602 1640 - -
Prci3g2653 1724 FunFam Photoperiod independent early flowering protein 1318 1379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2653 Prci-Chr3 39124949 39134265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2653 675 872 RAD5 or RAD16-like Gene Family AT5G43530 32.258 2.37e-26 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g2653 SNF2_N 4.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2653 K11661 - gmx:100794898 2524.2