Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2652 ATGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAAAAAAAGTCACCAGAGCATCATAGGATTTCCGAATACAAGGGAGTAGATGAAGACTTTACCAACAAATCAAATGAAGCTAATGCTGCAGTGTTTCAGTCAGACCCTATTGACAATGATGAAGAATACAATGTACAATCCGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCTGCTTTGCATGATGAAGTTGATCTTCCGCTGGAGGAGTTGCTGAAACGTTATTCTGGAGAGAAAGGACCAAGTCAAGAAAGTACTCCGGCGCACAGTGATGATGATAATGGAGAAGTCACAGCTGGTGATGGAAATGAAAATGGAGACAATTTATATGGTAGCAAGCTTGGGTCAAGCAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGACAGTAATGGTGGTCTAACTACACCAGCGGAGAATATAGCCAAAGATAAGACCTGTCAATCTGAAAATATGAAGCTAATTTGTGGTGAGAGGGCCACTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGGAGATGGTGACTTCTTGCTTGGCACAGAAGACAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCAAAGGATGAGATTGCTTTATTGCAAAGGGAGAGTGATATGCCTGTTGAGGAACTCCTTGGAATGTATAAAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTATCAGAGGATCTTTTGGATTCTTCACTGCTTGAAGATGATGCGAAGAACGATCCTGTTGTTTCTGGGGATGAACATGTCAAGCCTTTTGAACACATGGCTTTTGTACAGTCCCATACTGAAGAACAACATTGGGAAGCACCTCATGAAAATCTGGAGGGAAGGGAGAGTGAAAATCTGATTGCAGATGCAGCAGCGGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTCCGCACAAAATTCCCTTTTCTTCTGAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGACTGGCTTGTAACAATGTATGAAAAAAGGTTGAATGGGATTTTGGCAGATGAAATGGGGCTCGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCGCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGTAGTGCAAAAGAGCGGAAGCTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCGAAGAGACGTATTCTCTTGACTGGTACACCGCTGCAGAATGATCTTATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCACCAAGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGCATGGTGGAGGGAGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGCAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGTATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAGCCCCTTTTCATCAGTAGACCTAAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTAATGAGACCCCTGCGAGTTTAATTATGGAGCGTGCTGATATGAATGCCCTACAAGTATTTAGGCCTGAATCGAAGGATCAGAAAAGTTTCCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGTGAAGGAACGTGCGGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAGAAGGCCTGTCTATTCAACAACCCTTCAGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACAGGTATTCCTCAAAGCTAGCTGACATTGTCCTCTCACCAATTGAACGGTTCCAAAAGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACGCCTGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGCTTTGTCACCCCTTCTGTCACCAATCAGGCCAGCAATTGTCCGACGGCAGGTTTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACACAAATGACAAAGATGCTTGACATATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTGGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATCGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATTCAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCCATGGAGTTATTTTCAGGTCATAGAACAGTTCCTGTGAAAAATATGCAGAAGGAGAAAAGCCAGAACAGTGGGGATGAAGCTTCTGTAAGTATTGCAGATGTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTAGAACTGGAAGAAGCTGTGGAAAATCAGGAGTTCACAGAAGAAGCTATTGGGAGACTTGATGAGGATGAGTACATAAATGAAGATGATATTAAAGTGGATGAGCCTTCAGAATTAGCTGAATCAGTTTCCAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACATCTCTCTGTATCTATCAAAGATGATGATGTTGACATGCTAGCTGATGTCAAACAGATGGCTGCGGCTGCAGCTGCTGCTGGACAAGCTATATCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGATTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCGGCCTTGGAATCTGAAGTTAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGGCAGCAAGTAGAGACCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAAGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGGCCTAAAAAGAAACCCAAGAAAACCAAGTTTAAATCGCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAGCCTATGAAAGAAGAGCCACAAATAGACCCGATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCATGCATCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACGATAAAGAAGTCCAAGAAAACCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCGGATGAACATGCAGAATCAAAGCAATATGAAGGTATGATTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAGATGGGAGGGAAAATAACCATAACTCCAATGCCAGTCAAACGTATTCTGACAATAAAACCAGAAAAAATGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCGTCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGCTTGGTTAGTGAAACACTCTACGGTATGACTGCTGGAGGATCATACAGGGGGAGATACCGTCATGCTGTCCATTGCTGCGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCCATGACAGACAATGCTAATCACGAGAGGGGCAACAATGCTGGCTCTGGGAAGTCTCTTCTTAAAGTTACAGAGGATAACATTAGGATGTTGTTAGATGTCGCCTCTGAGCAGGAAAATAGGGAGTTATTACTGCAAAAGCATTTTTTTGCACTGCTTTCTTCTGTGTGGAAGGCAGGATCACATGTTGACCGAAGGCAAAATCCGCCCCCCACACAAAATGGCCACTATGGTTTCTTTACTTCCACCGGGCATAATTCTCAGAGCCTTATGAAGAAGCCTTCTGAAAGGATGACGGTCACTAATCTGGCAGAGAGCAGAAAGTTATTGGCTGCTGCACTTGATGACACCGGCAGTAGGCAGCAGCATGACAAAATCTCCCTCTCAAATAAGAGTGACAATGTGCCACTGACCACAGATCAGCTGGTTGTGTCTCTGGAATTCCCGAAAGAAGAGAATGACACCTTAATCTCATTCCCTTCTGTTATAAATTTATCTATACAGGAGACGGAACCCCTACCATCGTTAATTTACCCTATTGGGGAAGATAATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGTTTCAGGGAGGCAGCCAGAGCTTGCGGGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGAGCAGGATCCAAGATACAAGCTTCGGGGAAGCACAAGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCAAAGTCCAAACGAAATTCATCAGATACTTGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCAATGCCATCACTTGAAGCCAAGGATCTGAGAATTGATCTTAATTCATTAGCAATGGACGAAGCGGGGGCTGATAATATGGATTGCAATCTACCCTTTGTCCTGAATGAGGAAAATTCGTTGGAAACAGAGACTTTTGGCATGGTTCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACCGACATTGGATAA 5835 0.4171 MKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKKSPEHHRISEYKGVDEDFTNKSNEANAAVFQSDPIDNDEEYNVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKRYSGEKGPSQESTPAHSDDDNGEVTAGDGNENGDNLYGSKLGSSNSSMVSGRRCDDSNGGLTTPAENIAKDKTCQSENMKLICGERATENLAYDFSDEEGDGDFLLGTEDNDDETTLSEEEKLEKMDAIDPKDEIALLQRESDMPVEELLGMYKKYSSGKHREDESEDAASLSEDLLDSSLLEDDAKNDPVVSGDEHVKPFEHMAFVQSHTEEQHWEAPHENLEGRESENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWESDEVKANETPASLIMERADMNALQVFRPESKDQKSFQGTNIFEEIQRAIWEERLREVKERAAAIAWWNSLRCKRRPVYSTTLQDLLTIRHPVYDIHQVKANPRSYRYSSKLADIVLSPIERFQKMVDVVESFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEALSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTVPVKNMQKEKSQNSGDEASVSIADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYINEDDIKVDEPSELAESVSKSSKENALMLVGSDPKEERHLSVSIKDDDVDMLADVKQMAAAAAAAGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVETLAQHQLMEELENEAKQKEEADEENCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQIDPMSIDDEIVTSLDHASPNSTMQKKRKKPKFIADGEEEKTIKKSKKTKRAADICASDSDNALLGLPDEHAESKQYEGMIESEQKPPSRSKMGGKITITPMPVKRILTIKPEKMKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHAVHCCERFRELVQKYVLSMTDNANHERGNNAGSGKSLLKVTEDNIRMLLDVASEQENRELLLQKHFFALLSSVWKAGSHVDRRQNPPPTQNGHYGFFTSTGHNSQSLMKKPSERMTVTNLAESRKLLAAALDDTGSRQQHDKISLSNKSDNVPLTTDQLVVSLEFPKEENDTLISFPSVINLSIQETEPLPSLIYPIGEDNHLRACGSVAEDRFREAARACGEDSCGWASSVFPTNDARSRAGSKIQASGKHKSSISDSIKPSKSKSKRNSSDTCEMRHQRVEPLFQSMPSLEAKDLRIDLNSLAMDEAGADNMDCNLPFVLNEENSLETETFGMVPHDFVAGLISGLDDCSELPEYTDIG 1944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1822 1860 - -
Prci3g2652 1944 Pfam Helicase conserved C-terminal domain 950 1062 IPR001650 -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 178 209 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1380 1394 - -
Prci3g2652 1944 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 585 IPR014001 -
Prci3g2652 1944 Coils Coil 1342 1365 - -
Prci3g2652 1944 Coils Coil 103 123 - -
Prci3g2652 1944 FunFam Photoperiod-independent early flowering 1 378 653 - -
Prci3g2652 1944 SMART helicmild6 979 1062 IPR001650 -
Prci3g2652 1944 SMART ultradead3 404 597 IPR014001 -
Prci3g2652 1944 PANTHER HELICASE SRCAP-RELATED 2 1844 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 53 73 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1840 1860 - -
Prci3g2652 1944 Gene3D - 915 1168 IPR027417 -
Prci3g2652 1944 ProSiteProfiles Myb-like domain profile. 1542 1595 IPR001005 -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 243 262 - -
Prci3g2652 1944 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 915 1169 - -
Prci3g2652 1944 Coils Coil 1167 1187 - -
Prci3g2652 1944 CDD DEXQc_SRCAP 408 630 - -
Prci3g2652 1944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 630 IPR027417 -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1354 1443 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1354 1379 - -
Prci3g2652 1944 Gene3D - 1538 1599 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 53 209 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1395 1414 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 1822 1839 - -
Prci3g2652 1944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 1137 IPR027417 -
Prci3g2652 1944 Gene3D - 654 706 - -
Prci3g2652 1944 FunFam Photoperiod independent early flowering protein 1538 1599 - -
Prci3g2652 1944 Coils Coil 1294 1314 - -
Prci3g2652 1944 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 654 719 - -
Prci3g2652 1944 Pfam SNF2-related domain 425 697 IPR000330 GO:0005524|GO:0140658
Prci3g2652 1944 CDD SF2_C_SNF 938 1073 - -
Prci3g2652 1944 Gene3D - 377 653 IPR038718 -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 243 259 - -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 121 146 - -
Prci3g2652 1944 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 953 1103 IPR001650 -
Prci3g2652 1944 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2652 Prci-Chr3 39122318 39134265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2652 428 700 RAD5 or RAD16-like Gene Family AT5G43530 29.193 1.98e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g2652 SNF2_N 5.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2652 K11661 - gmx:100794898 2772.65