Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2651 ATGGCGTCTAAAGGTCCGAGGTCTAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGGCGTCCTAAAACTCATTGGGATCATGTCATGGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAAGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAGGATGAAGGAAGAAGAGCAGCGATTAAGGAAAGTGGCACTGAATATTTCAAAGGATGTTAAGAAATTTTGGATGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAAAAAAAGTCACCAGAGCATCATAGGATTTCCGAATACAAGGGAGTAGATGAAGACTTTACCAACAAATCAAATGAAGCTAATGCTGTGTTTCAGTCAGACCCTATTGACAATGATGAAGAATACAATGTACAATCCGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCTGCTTTGCATGATGAAGTTGATCTTCCGCTGGAGGAGTTGCTGAAACGTTATTCTGGAGAGAAAGGACCAAGTCAAGAAAGTACTCCGGCGCACAGTGATGATGATAATGGAGAAGTCACAGCTGGTGATGGAAATGAAAATGGAGACAATTTATATGGTAGCAAGCTTGGGTCAAGCAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGACAGTAATGGTGGTCTAACTACACCAGCGGAGAATATAGCCAAAGATAAGACCTGTCAATCTGAAAATATGAAGCTAATTTGTGGTGAGAGGGCCACTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGGAGATGGTGACTTCTTGCTTGGCACAGAAGACAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCAAAGGATGAGATTGCTTTATTGCAAAGGGAGAGTGATATGCCTGTTGAGGAACTCCTTGGAATGTATAAAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTATCAGAGGATCTTTTGGATTCTTCACTGCTTGAAGATGATGCGAAGAACGATCCTGTTGTTTCTGGGGATGAACATGTCAAGCCTTTTGAACACATGGCTTTTGTACAGTCCCATACTGAAGAACAACATTGGGAAGCACCTCATGAAAATCTGGAGGGAAGGGAGAGTGAAAATCTGATTGCAGATGCAGCAGCGGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTCCGCACAAAATTCCCTTTTCTTCTGAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGACTGGCTTGTAACAATGTATGAAAAAAGGTTGAATGGGATTTTGGCAGATGAAATGGGGCTCGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCGCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGTAGTGCAAAAGAGCGGAAGCTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCGAAGAGACGTATTCTCTTGACTGGTACACCGCTGCAGAATGATCTTATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCACCAAGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGCATGGTGGAGGGAGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGCAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGTATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAGCCCCTTTTCATCAGTAGACCTAAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTAATGAGACCCCTGCGAGTTTAATTATGGAGCGTGCTGATATGAATGCCCTACAAGTATTTAGGCCTGAATCGAAGGATCAGAAAAGTTTCCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGTGAAGGAACGTGCGGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAGAAGGCCTGTCTATTCAACAACCCTTCAGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACAGGTATTCCTCAAAGCTAGCTGACATTGTCCTCTCACCAATTGAACGGTTCCAAAAGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACGCCTGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGCTTTGTCACCCCTTCTGTCACCAATCAGGCCAGCAATTGTCCGACGGCAGGTTTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACACAAATGACAAAGATGCTTGACATATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTGGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATCGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATTCAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCCATGGAGTTATTTTCAGGTCATAGAACAGTTCCTGTGAAAAATATGCAGAAGGAGAAAAGCCAGAACAGTGGGGATGAAGCTTCTGTAAGTATTGCAGATGTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTAGAACTGGAAGAAGCTGTGGAAAATCAGGAGTTCACAGAAGAAGCTATTGGGAGACTTGATGAGGATGAGTACATAAATGAAGATGATATTAAAGTGGATGAGCCTTCAGAATTAGCTGAATCAGTTTCCAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACATCTCTCTGTATCTATCAAAGATGATGATGTTGACATGCTAGCTGATGTCAAACAGATGGCTGCGGCTGCAGCTGCTGCTGGACAAGCTATATCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGATTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCGGCCTTGGAATCTGAAGTTAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGGCAGCAAGTAGAGACCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAAGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGGCCTAAAAAGAAACCCAAGAAAACCAAGTTTAAATCGCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAGCCTATGAAAGAAGAGCCACAAATAGACCCGATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCATGCATCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACGATAAAGAAGTCCAAGAAAACCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCGGATGAACATGCAGAATCAAAGCAATATGAAGGTATGATTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAGATGGGAGGGAAAATAACCATAACTCCAATGCCAGTCAAACGTATTCTGACAATAAAACCAGAAAAAATGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCGTCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGCTTGGTTAGTGAAACACTCTACGGTATGACTGCTGGAGGATCATACAGGGGGAGATACCGTCATGCTGTCCATTGCTGCGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCCATGACAGACAATGCTAATCACGAGAGGGGCAACAATGCTGGCTCTGGGAAGTCTCTTCTTAAAGTTACAGAGGATAACATTAGGATGTTGTTAGATGTCGCCTCTGAGCAGGAAAATAGGGAGTTATTACTGCAAAAGCATTTTTTTGCACTGCTTTCTTCTGTGTGGAAGGCAGGATCACATGTTGACCGAAGGCAAAATCCGCCCCCCACACAAAATGGCCACTATGGTTTCTTTACTTCCACCGGGCATAATTCTCAGAGCCTTATGAAGAAGCCTTCTGAAAGGATGACGGTCACTAATCTGGCAGAGAGCAGAAAGTTATTGGCTGCTGCACTTGATGACACCGGCAGTAGGCAGCAGCATGACAAAATCTCCCTCTCAAATAAGAGTGACAATGTGCCACTGACCACAGATCAGCTGGTTGTGTCTCTGGAATTCCCGAAAGAAGAGAATGACACCTTAATCTCATTCCCTTCTGTTATAAATTTATCTATACAGGAGACGGAACCCCTACCATCGTTAATTTACCCTATTGGGGAAGATAATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGTTTCAGGGAGGCAGCCAGAGCTTGCGGGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGAGCAGGATCCAAGATACAAGCTTCGGGGAAGCACAAGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCAAAGTCCAAACGAAATTCATCAGATACTTGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCAATGCCATCACTTGAAGCCAAGGATCTGAGAATTGATCTTAATTCATTAGCAATGGACGAAGCGGGGGCTGATAATATGGATTGCAATCTACCCTTTGTCCTGAATGAGGAAAATTCGTTGGAAACAGAGACTTTTGGCATGGTTCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACCGACATTGGATAA 6144 0.4185 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVMEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKRMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKKSPEHHRISEYKGVDEDFTNKSNEANAVFQSDPIDNDEEYNVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKRYSGEKGPSQESTPAHSDDDNGEVTAGDGNENGDNLYGSKLGSSNSSMVSGRRCDDSNGGLTTPAENIAKDKTCQSENMKLICGERATENLAYDFSDEEGDGDFLLGTEDNDDETTLSEEEKLEKMDAIDPKDEIALLQRESDMPVEELLGMYKKYSSGKHREDESEDAASLSEDLLDSSLLEDDAKNDPVVSGDEHVKPFEHMAFVQSHTEEQHWEAPHENLEGRESENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWESDEVKANETPASLIMERADMNALQVFRPESKDQKSFQGTNIFEEIQRAIWEERLREVKERAAAIAWWNSLRCKRRPVYSTTLQDLLTIRHPVYDIHQVKANPRSYRYSSKLADIVLSPIERFQKMVDVVESFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEALSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTVPVKNMQKEKSQNSGDEASVSIADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYINEDDIKVDEPSELAESVSKSSKENALMLVGSDPKEERHLSVSIKDDDVDMLADVKQMAAAAAAAGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVETLAQHQLMEELENEAKQKEEADEENCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQIDPMSIDDEIVTSLDHASPNSTMQKKRKKPKFIADGEEEKTIKKSKKTKRAADICASDSDNALLGLPDEHAESKQYEGMIESEQKPPSRSKMGGKITITPMPVKRILTIKPEKMKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHAVHCCERFRELVQKYVLSMTDNANHERGNNAGSGKSLLKVTEDNIRMLLDVASEQENRELLLQKHFFALLSSVWKAGSHVDRRQNPPPTQNGHYGFFTSTGHNSQSLMKKPSERMTVTNLAESRKLLAAALDDTGSRQQHDKISLSNKSDNVPLTTDQLVVSLEFPKEENDTLISFPSVINLSIQETEPLPSLIYPIGEDNHLRACGSVAEDRFREAARACGEDSCGWASSVFPTNDARSRAGSKIQASGKHKSSISDSIKPSKSKSKRNSSDTCEMRHQRVEPLFQSMPSLEAKDLRIDLNSLAMDEAGADNMDCNLPFVLNEENSLETETFGMVPHDFVAGLISGLDDCSELPEYTDIG 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2651 2047 Gene3D - 757 809 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 224 249 - -
Prci3g2651 2047 SMART helicmild6 1082 1165 IPR001650 -
Prci3g2651 2047 Pfam SNF2-related domain 528 800 IPR000330 GO:0005524|GO:0140658
Prci3g2651 2047 Gene3D - 480 756 IPR038718 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1 34 - -
Prci3g2651 2047 Coils Coil 1397 1417 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 156 312 - -
Prci3g2651 2047 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1483 1497 - -
Prci3g2651 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 688 IPR014001 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 156 177 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 196 223 - -
Prci3g2651 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 1239 IPR027417 -
Prci3g2651 2047 CDD DEXQc_SRCAP 511 733 - -
Prci3g2651 2047 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1018 1272 - -
Prci3g2651 2047 CDD SF2_C_SNF 1041 1176 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 346 362 - -
Prci3g2651 2047 SMART ultradead3 507 700 IPR014001 -
Prci3g2651 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1056 1206 IPR001650 -
Prci3g2651 2047 Coils Coil 206 226 - -
Prci3g2651 2047 FunFam Photoperiod independent early flowering protein 1641 1702 - -
Prci3g2651 2047 Pfam Helicase conserved C-terminal domain 1053 1165 IPR001650 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 281 312 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1498 1517 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1925 1942 - -
Prci3g2651 2047 Coils Coil 1445 1468 - -
Prci3g2651 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 733 IPR027417 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1457 1546 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1457 1482 - -
Prci3g2651 2047 PANTHER HELICASE SRCAP-RELATED 15 1947 - -
Prci3g2651 2047 FunFam Photoperiod-independent early flowering 1 481 756 - -
Prci3g2651 2047 Coils Coil 1270 1290 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1943 1963 - -
Prci3g2651 2047 Gene3D - 1018 1271 IPR027417 -
Prci3g2651 2047 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 757 822 - -
Prci3g2651 2047 Pfam HSA domain 27 93 IPR014012 -
Prci3g2651 2047 ProSiteProfiles Myb-like domain profile. 1645 1698 IPR001005 -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 346 365 - -
Prci3g2651 2047 SMART bromneu2 23 94 IPR014012 -
Prci3g2651 2047 Gene3D - 1641 1702 - -
Prci3g2651 2047 MobiDBLite consensus disorder prediction 1925 1963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2651 Prci-Chr3 39119327 39134265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2651 531 803 RAD5 or RAD16-like Gene Family AT5G43530 29.193 2.25e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g2651 SNF2_N 5.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2651 K11661 - gmx:100794898 2972.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3189 1 49805660 49810936 Prci3g2651 3 39119327 39134265 CCT