Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2650 ATGGCGTCTAAAGGTCCGAGGTCTAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGGCGTCCTAAAACTCATTGGGATCATGTCATGGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAAGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAGGATGAAGGAAGAAGAGCAGCGATTAAGGAAAGTGGCACTGAATATTTCAAAGGATGTTAAGAAATTTTGGATGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAAAAAAAGTCACCAGAGCATCATAGGATTTCCGAATACAAGGGAGTAGATGAAGACTTTACCAACAAATCAAATGAAGCTAATGCTGCAGTGTTTCAGTCAGACCCTATTGACAATGATGAAGAATACAATGTACAATCCGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAAGAAAGGCAAGAGGAGTTGGCTGCTTTGCATGATGAAGTTGATCTTCCGCTGGAGGAGTTGCTGAAACGTTATTCTGGAGAGAAAGGACCAAGTCAAGAAAGTACTCCGGCGCACAGTGATGATGATAATGGAGAAGTCACAGCTGGTGATGGAAATGAAAATGGAGACAATTTATATGGTAGCAAGCTTGGGTCAAGCAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGACAGTAATGGTGGTCTAACTACACCAGCGGAGAATATAGCCAAAGATAAGACCTGTCAATCTGAAAATATGAAGCTAATTTGTGGTGAGAGGGCCACTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGGAGATGGTGACTTCTTGCTTGGCACAGAAGACAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCAAAGGATGAGATTGCTTTATTGCAAAGGGAGAGTGATATGCCTGTTGAGGAACTCCTTGGAATGTATAAAAAGTATTCCAGTGGCAAACATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTATCAGAGGATCTTTTGGATTCTTCACTGCTTGAAGATGATGCGAAGAACGATCCTGTTGTTTCTGGGGATGAACATGTCAAGCCTTTTGAACACATGGCTTTTGTACAGTCCCATACTGAAGAACAACATTGGGAAGCACCTCATGAAAATCTGGAGGGAAGGGAGAGTGAAAATCTGATTGCAGATGCAGCAGCGGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTCCGCACAAAATTCCCTTTTCTTCTGAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGACTGGCTTGTAACAATGTATGAAAAAAGGTTGAATGGGATTTTGGCAGATGAAATGGGGCTCGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCGCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGTAGTGCAAAAGAGCGGAAGCTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCGAAGAGACGTATTCTCTTGACTGGTACACCGCTGCAGAATGATCTTATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCACCAAGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGCATGGTGGAGGGAGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGCAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGTATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAGCCCCTTTTCATCAGTAGACCTAAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTAATGAGACCCCTGCGAGTTTAATTATGGAGCGTGCTGATATGAATGCCCTACAAGTATTTAGGCCTGAATCGAAGGATCAGAAAAGTTTCCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGTGAAGGAACGTGCGGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAGAAGGCCTGTCTATTCAACAACCCTTCAGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACAGGTATTCCTCAAAGCTAGCTGACATTGTCCTCTCACCAATTGAACGGTTCCAAAAGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACGCCTGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGCTTTGTCACCCCTTCTGTCACCAATCAGGCCAGCAATTGTCCGACGGCAGGTTTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACACAAATGACAAAGATGCTTGACATATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTGGATGGATCAACACAACCAGAAGAGAGGCAGACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATCGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATTCAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCCATGGAGTTATTTTCAGGTCATAGAACAGTTCCTGTGAAAAATATGCAGAAGGAGAAAAGCCAGAACAGTGGGGATGAAGCTTCTGTAAGTATTGCAGATGTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTAGAACTGGAAGAAGCTGTGGAAAATCAGGAGTTCACAGAAGAAGCTATTGGGAGACTTGATGAGGATGAGTACATAAATGAAGATGATATTAAAGTGGATGAGCCTTCAGAATTAGCTGAATCAGTTTCCAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACATCTCTCTGTATCTATCAAAGATGATGATGTTGACATGCTAGCTGATGTCAAACAGATGGCTGCGGCTGCAGCTGCTGCTGGACAAGCTATATCAGCCTTTGAGAACCAGCTACGCCCAATTGATCGGTATGCCATTCGATTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCGGCCTTGGAATCTGAAGTTAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGGCAGCAAGTAGAGACCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAGGCTAAGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAAATTCAAACACCAAGGGATTCTAAGCCCAGGCCTAAAAAGAAACCCAAGAAAACCAAGTTTAAATCGCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAGCCTATGAAAGAAGAGCCACAAATAGACCCGATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCATGCATCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGATGGTGAAGAGGAGAAGACGATAAAGAAGTCCAAGAAAACCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCGGATGAACATGCAGAATCAAAGCAATATGAAGGTATGATTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAGATGGGAGGGAAAATAACCATAACTCCAATGCCAGTCAAACGTATTCTGACAATAAAACCAGAAAAAATGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCGTCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGCTTGGTTAGTGAAACACTCTACGGTATGACTGCTGGAGGATCATACAGGGGGAGATACCGTCATGCTGTCCATTGCTGCGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCCATGACAGACAATGCTAATCACGAGAGGGGCAACAATGCTGGCTCTGGGAAGTCTCTTCTTAAAGTTACAGAGGATAACATTAGGATGTTGTTAGATGTCGCCTCTGAGCAGGAAAATAGGGAGTTATTACTGCAAAAGCATTTTTTTGCACTGCTTTCTTCTGTGTGGAAGGCAGGATCACATGTTGACCGAAGGCAAAATCCGCCCCCCACACAAAATGGCCACTATGGTTTCTTTACTTCCACCGGGCATAATTCTCAGAGCCTTATGAAGAAGCCTTCTGAAAGGATGACGGTCACTAATCTGGCAGAGAGCAGAAAGTTATTGGCTGCTGCACTTGATGACACCGGCAGTAGGCAGCAGCATGACAAAATCTCCCTCTCAAATAAGAGTGACAATGTGCCACTGACCACAGATCAGCTGGTTGTGTCTCTGGAATTCCCGAAAGAAGAGAATGACACCTTAATCTCATTCCCTTCTGTTATAAATTTATCTATACAGGAGACGGAACCCCTACCATCGTTAATTTACCCTATTGGGGAAGATAATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGTTTCAGGGAGGCAGCCAGAGCTTGCGGGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGAGCAGGATCCAAGATACAAGCTTCGGGGAAGCACAAGTCTTCCATCTCAGACTCCATTAAGCCTTCTAAGTCAAAGTCCAAACGAAATTCATCAGATACTTGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCAATGCCATCACTTGAAGCCAAGGATCTGAGAATTGATCTTAATTCATTAGCAATGGACGAAGCGGGGGCTGATAATATGGATTGCAATCTACCCTTTGTCCTGAATGAGGAAAATTCGTTGGAAACAGAGACTTTTGGCATGGTTCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACCGACATTGGATAA 6147 0.4186 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVMEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKRMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKKSPEHHRISEYKGVDEDFTNKSNEANAAVFQSDPIDNDEEYNVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKRYSGEKGPSQESTPAHSDDDNGEVTAGDGNENGDNLYGSKLGSSNSSMVSGRRCDDSNGGLTTPAENIAKDKTCQSENMKLICGERATENLAYDFSDEEGDGDFLLGTEDNDDETTLSEEEKLEKMDAIDPKDEIALLQRESDMPVEELLGMYKKYSSGKHREDESEDAASLSEDLLDSSLLEDDAKNDPVVSGDEHVKPFEHMAFVQSHTEEQHWEAPHENLEGRESENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWESDEVKANETPASLIMERADMNALQVFRPESKDQKSFQGTNIFEEIQRAIWEERLREVKERAAAIAWWNSLRCKRRPVYSTTLQDLLTIRHPVYDIHQVKANPRSYRYSSKLADIVLSPIERFQKMVDVVESFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEALSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTVPVKNMQKEKSQNSGDEASVSIADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYINEDDIKVDEPSELAESVSKSSKENALMLVGSDPKEERHLSVSIKDDDVDMLADVKQMAAAAAAAGQAISAFENQLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVETLAQHQLMEELENEAKQKEEADEENCDPGKIQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQIDPMSIDDEIVTSLDHASPNSTMQKKRKKPKFIADGEEEKTIKKSKKTKRAADICASDSDNALLGLPDEHAESKQYEGMIESEQKPPSRSKMGGKITITPMPVKRILTIKPEKMKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHAVHCCERFRELVQKYVLSMTDNANHERGNNAGSGKSLLKVTEDNIRMLLDVASEQENRELLLQKHFFALLSSVWKAGSHVDRRQNPPPTQNGHYGFFTSTGHNSQSLMKKPSERMTVTNLAESRKLLAAALDDTGSRQQHDKISLSNKSDNVPLTTDQLVVSLEFPKEENDTLISFPSVINLSIQETEPLPSLIYPIGEDNHLRACGSVAEDRFREAARACGEDSCGWASSVFPTNDARSRAGSKIQASGKHKSSISDSIKPSKSKSKRNSSDTCEMRHQRVEPLFQSMPSLEAKDLRIDLNSLAMDEAGADNMDCNLPFVLNEENSLETETFGMVPHDFVAGLISGLDDCSELPEYTDIG 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2650 2048 MobiDBLite consensus disorder prediction 347 366 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 282 313 - -
Prci3g2650 2048 Coils Coil 1446 1469 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1926 1964 - -
Prci3g2650 2048 Pfam Helicase conserved C-terminal domain 1054 1166 IPR001650 -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1 34 - -
Prci3g2650 2048 Gene3D - 1019 1272 IPR027417 -
Prci3g2650 2048 FunFam Photoperiod independent early flowering protein 1642 1703 - -
Prci3g2650 2048 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Prci3g2650 2048 Coils Coil 207 227 - -
Prci3g2650 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 734 IPR027417 -
Prci3g2650 2048 Gene3D - 481 757 IPR038718 -
Prci3g2650 2048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1207 IPR001650 -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1499 1518 - -
Prci3g2650 2048 Gene3D - 1642 1703 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 156 177 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1458 1483 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1458 1547 - -
Prci3g2650 2048 Gene3D - 758 810 - -
Prci3g2650 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1240 IPR027417 -
Prci3g2650 2048 Coils Coil 1271 1291 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1944 1964 - -
Prci3g2650 2048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 689 IPR014001 -
Prci3g2650 2048 FunFam Photoperiod-independent early flowering 1 482 757 - -
Prci3g2650 2048 SMART ultradead3 508 701 IPR014001 -
Prci3g2650 2048 CDD DEXQc_SRCAP 512 734 - -
Prci3g2650 2048 ProSiteProfiles Myb-like domain profile. 1646 1699 IPR001005 -
Prci3g2650 2048 SMART helicmild6 1083 1166 IPR001650 -
Prci3g2650 2048 CDD SF2_C_SNF 1042 1177 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 347 363 - -
Prci3g2650 2048 Pfam SNF2-related domain 529 801 IPR000330 GO:0005524|GO:0140658
Prci3g2650 2048 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 758 823 - -
Prci3g2650 2048 Coils Coil 1398 1418 - -
Prci3g2650 2048 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1019 1273 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 197 224 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1926 1943 - -
Prci3g2650 2048 Pfam HSA domain 27 93 IPR014012 -
Prci3g2650 2048 PANTHER HELICASE SRCAP-RELATED 15 1948 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 1484 1498 - -
Prci3g2650 2048 SMART bromneu2 23 94 IPR014012 -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 225 250 - -
Prci3g2650 2048 MobiDBLite consensus disorder prediction 156 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2650 Prci-Chr3 39119326 39134265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2650 532 804 RAD5 or RAD16-like Gene Family AT5G43530 29.193 2.41e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g2650 SNF2_N 5.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2650 K11661 - gmx:100794898 2974.88