Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2618 ATGGATTTGAATTCGCATCAGACTTATCAGCACCAACAGCATCAATCCAATTCCGGATTGGCTCGGTTCCGCTCTGCCCCCAGCTCGCTTCTTGCTAATTTCAGACAAGCTCTCGAATCTGCTGAGTCCGAGAGACGAATTTCGAGATTCGCAAACAACAGTAATAAGAACGATACGGCGTCGCCAAGCTTTCAAGAATTTGAATCCGAACACAAACCCTCTAAATCTCCATCAGAGGCTGCTCTGAACCGTATGAATTCCCAGCAAGGCTATAGTGGCGGCGGGCTACCACCTCACTATCCAAGGCATAGTTCTTCCATGGATAGCTCCTTCGGACTGATGGGTTCAATGGGAATGGATCACGAAACTCGGCCAAAAGGCTTCGCTTTGCCTCTTCTTAGGCAAAGCAGCTCCCCTGCCGGTCTTTTCTCGAACATCTCCTTTCCAAATGGGTATGGCCCCATGAAAGGGGTGAGAAACTATGGTGGGGTGAACGGCAGTAGTGATGGTGGACTTACTCCATCTATCAATGGATTGAAGAATGAGATTAGCTTCTCATCAAGAAGTACCTCCCTGGGAGCCCTGTCCCAGATCTCTGAAATAGAATGTGAGGGTATTGGAGCAACTAGCCCAGATAATGGGAGGGTGGGAACTAACAGTGGTGATACTCGGTATTATGGCCCTGGCTTCCCTTATACTTCCTGGAATGATACATCACATGTCTCAGAAAATCTCACTGGTTTTAAACGACATCAAACTAGTAATGAAAAGTTGTATTCTGATGGTCAGAATGCTGAGCCTGGAAGTCGGGTTAATGTATTATCGCATAACTTGAGTTTGCCAAAAACCCCATCACGTATGGCTTCCGTGGAGAAGTTTCTTCAATTCCCAGATTCTGTTCCTTGTAAAATAAGGGCAAAGCGGGGCTGTGCCACTCATCCACGAAGCATTGCAGAAAGGGTTAGAAGAACTCGTATCAGTGAACGAATGAAAAAGTTACAAGATCTCGTCCCGAACATGGACAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTGTTATGTATATTAAAGATCTTCAGAAACAGTTCATGACTCTGAGCGAGAAACGGGCAAACTGCAAATGTACAAGCACGCAGAAAGCAGATGCAAACTGA 1158 0.462 MDLNSHQTYQHQQHQSNSGLARFRSAPSSLLANFRQALESAESERRISRFANNSNKNDTASPSFQEFESEHKPSKSPSEAALNRMNSQQGYSGGGLPPHYPRHSSSMDSSFGLMGSMGMDHETRPKGFALPLLRQSSSPAGLFSNISFPNGYGPMKGVRNYGGVNGSSDGGLTPSINGLKNEISFSSRSTSLGALSQISEIECEGIGATSPDNGRVGTNSGDTRYYGPGFPYTSWNDTSHVSENLTGFKRHQTSNEKLYSDGQNAEPGSRVNVLSHNLSLPKTPSRMASVEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVMYIKDLQKQFMTLSEKRANCKCTSTQKADAN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2618 385 Pfam Helix-loop-helix DNA-binding domain 315 361 IPR011598 GO:0046983
Prci3g2618 385 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 378 - -
Prci3g2618 385 SMART finulus 316 366 IPR011598 GO:0046983
Prci3g2618 385 MobiDBLite consensus disorder prediction 79 93 - -
Prci3g2618 385 FunFam Transcription factor bHLH130 family 311 380 - -
Prci3g2618 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 374 IPR036638 GO:0046983
Prci3g2618 385 MobiDBLite consensus disorder prediction 52 67 - -
Prci3g2618 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 360 IPR011598 GO:0046983
Prci3g2618 385 MobiDBLite consensus disorder prediction 36 119 - -
Prci3g2618 385 Gene3D - 311 383 IPR036638 GO:0046983
Prci3g2618 385 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2618 Prci-Chr3 38864927 38867969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2618 1 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.825 1.12e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g2618 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2618 - - jre:109020257 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2618 3 38864927 38867969 Prci3g2618 3 38864927 38867969 ECH