Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2605 ATGGCCGATCCTTTCTCCAATTTCTTCTCCCCGTCTCCTTCTTCTTCTTCTGGATTTTTTCAATTCAATCCCCTCCCTTACTATTACCCTCCTCCTCCTCCTGACCCTTCTCCTCTGGCACACCACCACCACCACCATCATCCCTATCTCCACAACTTCATCGCTTCTTCTTCTTCCTCATCACCTCCTACTTCCCCACCTCCCAGAGAGGCCCTCCCTCTTCTCAACCTCGACCCCAGTAAGCATCAACCACGTCACGAAGAACACGAGCCTCGTCATCACCAGTCTTGCAGTACTTCCATGGAACTGGAGGACGCTGCTCCTAATAAGCCTAAAGAAGAAGATGAGGAGGACGAGGACGAGGAAGAGGATGACAACAGTGTGACTGTTGCACTCCACATAGGGCTGCCTAGCCCTAGCGCTGCCGAGATGGCCTCTATCCTCTCTTCCTCCTCCACTCACGCTCGTGAAGCAGCAGCAGCAGACGGTGACGCTGATCTAGCAGATAATTCTTCCTCTGGACTCCCCAGGATCAACAAGGGCCAGTACTGGATCCCTACTCCTACTCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAGACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACCCAACCGACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGGAACAACATTGACCACCCTAGGGCTAAGCCCCTTAAGGATTTTAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTCGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTCTGGTATTGTATTTGTGGCTCTGACTTCAAGCACAAGAGGTCACTTAAAGATCATATCAAGGCTTTTGGGAGTGGTCATGCTGCTTACGGCATCGATGGCTTCGAAGAAGAAGACGAGCCTGCGTCCGAAGTAGAGCAGGATAACGAATCCACCCAGTAA 1080 0.5139 MADPFSNFFSPSPSSSSGFFQFNPLPYYYPPPPPDPSPLAHHHHHHHPYLHNFIASSSSSSPPTSPPPREALPLLNLDPSKHQPRHEEHEPRHHQSCSTSMELEDAAPNKPKEEDEEDEDEEEDDNSVTVALHIGLPSPSAAEMASILSSSSTHAREAAAADGDADLADNSSSGLPRINKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2605 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Prci3g2605 359 MobiDBLite consensus disorder prediction 111 126 - -
Prci3g2605 359 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Prci3g2605 359 SMART c2h2final6 198 220 IPR013087 -
Prci3g2605 359 SMART c2h2final6 282 302 IPR013087 -
Prci3g2605 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 302 IPR013087 -
Prci3g2605 359 PANTHER ZINC FINGER PROTEIN WIP2 43 356 IPR043584 GO:0003700|GO:0010468
Prci3g2605 359 FunFam Zinc finger protein WIP2 251 333 - -
Prci3g2605 359 Gene3D Classic Zinc Finger 197 220 - -
Prci3g2605 359 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Prci3g2605 359 Gene3D Classic Zinc Finger 260 334 - -
Prci3g2605 359 MobiDBLite consensus disorder prediction 21 127 - -
Prci3g2605 359 FunFam zinc finger protein WIP2-like 197 220 - -
Prci3g2605 359 SUPERFAMILY beta-beta-alpha zinc fingers 193 220 IPR036236 -
Prci3g2605 359 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2605 Prci-Chr3 38759473 38762143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2605 1 359 C2H2 Transcription Factor Family AT3G57670 60.660 1.92e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g2605 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2605 - - tpra:123897861 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3245 1 50129747 50132243 Prci3g2605 3 38759473 38762143 CCT
Prci3g2605 3 38759473 38762143 Prci3g2605 3 38759473 38762143 ECH